Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 FEM1AP1-201ENST00000431297 1995 ntBASIC18.72■□□□□ 0.59
MMP28Q9H239 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MMP28Q9H239 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.71■□□□□ 0.59
MMP28Q9H239 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MMP28Q9H239 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
MMP28Q9H239 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MMP28Q9H239 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.71■□□□□ 0.59
MMP28Q9H239 KRT125P-201ENST00000546827 989 ntBASIC18.71■□□□□ 0.59
MMP28Q9H239 Z92544.1-202ENST00000571933 1220 ntBASIC18.71■□□□□ 0.59
MMP28Q9H239 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.71■□□□□ 0.59
MMP28Q9H239 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.71■□□□□ 0.59
MMP28Q9H239 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MMP28Q9H239 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.71■□□□□ 0.59
MMP28Q9H239 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MMP28Q9H239 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.71■□□□□ 0.59
MMP28Q9H239 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.58
MMP28Q9H239 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
MMP28Q9H239 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
MMP28Q9H239 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
MMP28Q9H239 AC021242.3-201ENST00000607598 1377 ntBASIC18.7■□□□□ 0.58
MMP28Q9H239 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.7■□□□□ 0.58
MMP28Q9H239 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
MMP28Q9H239 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.7■□□□□ 0.58
MMP28Q9H239 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MMP28Q9H239 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
MMP28Q9H239 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MMP28Q9H239 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
MMP28Q9H239 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MMP28Q9H239 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.69■□□□□ 0.58
MMP28Q9H239 AC004448.1-201ENST00000458332 883 ntBASIC18.69■□□□□ 0.58
MMP28Q9H239 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.69■□□□□ 0.58
MMP28Q9H239 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.69■□□□□ 0.58
MMP28Q9H239 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MMP28Q9H239 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.69■□□□□ 0.58
MMP28Q9H239 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.68■□□□□ 0.58
MMP28Q9H239 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.68■□□□□ 0.58
MMP28Q9H239 AFG3L1P-217ENST00000557444 2447 ntBASIC18.68■□□□□ 0.58
MMP28Q9H239 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
MMP28Q9H239 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.68■□□□□ 0.58
MMP28Q9H239 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MMP28Q9H239 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
MMP28Q9H239 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.67■□□□□ 0.58
MMP28Q9H239 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 AC239859.2-201ENST00000444165 318 ntBASIC18.67■□□□□ 0.58
MMP28Q9H239 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.67■□□□□ 0.58
MMP28Q9H239 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.67■□□□□ 0.58
MMP28Q9H239 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.67■□□□□ 0.58
MMP28Q9H239 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
MMP28Q9H239 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.67■□□□□ 0.58
MMP28Q9H239 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
MMP28Q9H239 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MMP28Q9H239 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
MMP28Q9H239 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
MMP28Q9H239 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.67■□□□□ 0.58
MMP28Q9H239 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
MMP28Q9H239 PCDHAC2-203ENST00000615316 3011 ntBASIC18.66■□□□□ 0.58
MMP28Q9H239 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms