Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH6P55285 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH6P55285 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH6P55285 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.2■■□□□ 1.14
CDH6P55285 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CDH6P55285 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDH6P55285 MIR638-201ENST00000385237 100 ntBASIC22.19■■□□□ 1.14
CDH6P55285 AC104564.3-201ENST00000582367 638 ntBASIC22.19■■□□□ 1.14
CDH6P55285 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.19■■□□□ 1.14
CDH6P55285 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDH6P55285 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC22.19■■□□□ 1.14
CDH6P55285 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.19■■□□□ 1.14
CDH6P55285 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CDH6P55285 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDH6P55285 AC026310.3-201ENST00000625186 2373 ntBASIC22.18■■□□□ 1.14
CDH6P55285 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDH6P55285 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
CDH6P55285 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CDH6P55285 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDH6P55285 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.18■■□□□ 1.14
CDH6P55285 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.18■■□□□ 1.14
CDH6P55285 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CDH6P55285 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDH6P55285 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.18■■□□□ 1.14
CDH6P55285 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.18■■□□□ 1.14
CDH6P55285 AC005837.3-201ENST00000612163 286 ntBASIC22.18■■□□□ 1.14
CDH6P55285 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CDH6P55285 AC105233.4-201ENST00000642045 216 ntBASIC22.18■■□□□ 1.14
CDH6P55285 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CDH6P55285 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 AC142381.2-201ENST00000566120 298 ntBASIC22.17■■□□□ 1.14
CDH6P55285 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CDH6P55285 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.17■■□□□ 1.14
CDH6P55285 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.16■■□□□ 1.14
CDH6P55285 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.16■■□□□ 1.14
CDH6P55285 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CDH6P55285 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDH6P55285 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.16■■□□□ 1.14
CDH6P55285 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.16■■□□□ 1.14
CDH6P55285 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDH6P55285 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDH6P55285 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CDH6P55285 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC22.16■■□□□ 1.14
CDH6P55285 AL137060.1-201ENST00000618151 2648 ntBASIC22.16■■□□□ 1.14
CDH6P55285 AP006587.3-201ENST00000525742 1516 ntBASIC22.16■■□□□ 1.14
CDH6P55285 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.15■■□□□ 1.14
CDH6P55285 AC003102.1-202ENST00000563394 1796 ntBASIC22.15■■□□□ 1.14
CDH6P55285 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDH6P55285 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.15■■□□□ 1.14
CDH6P55285 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.15■■□□□ 1.14
CDH6P55285 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDH6P55285 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDH6P55285 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CDH6P55285 Z98882.1-201ENST00000622160 2253 ntBASIC22.14■■□□□ 1.14
CDH6P55285 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CDH6P55285 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.14■■□□□ 1.13
CDH6P55285 MIR572-201ENST00000384983 95 ntBASIC22.14■■□□□ 1.13
CDH6P55285 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.14■■□□□ 1.13
CDH6P55285 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.14■■□□□ 1.13
CDH6P55285 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.14■■□□□ 1.13
CDH6P55285 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDH6P55285 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.14■■□□□ 1.13
CDH6P55285 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.14■■□□□ 1.13
CDH6P55285 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.13■■□□□ 1.13
CDH6P55285 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.13■■□□□ 1.13
CDH6P55285 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.13■■□□□ 1.13
CDH6P55285 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.13■■□□□ 1.13
CDH6P55285 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.13■■□□□ 1.13
CDH6P55285 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.13■■□□□ 1.13
CDH6P55285 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.13■■□□□ 1.13
CDH6P55285 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDH6P55285 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDH6P55285 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
CDH6P55285 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDH6P55285 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDH6P55285 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms