Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MMP28Q9H239 MIR4281-201ENST00000580852 62 ntBASIC18.89■□□□□ 0.61
MMP28Q9H239 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MMP28Q9H239 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MMP28Q9H239 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MMP28Q9H239 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
MMP28Q9H239 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.88■□□□□ 0.61
MMP28Q9H239 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.88■□□□□ 0.61
MMP28Q9H239 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.88■□□□□ 0.61
MMP28Q9H239 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MMP28Q9H239 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MMP28Q9H239 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MMP28Q9H239 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MMP28Q9H239 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MMP28Q9H239 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MMP28Q9H239 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
MMP28Q9H239 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MMP28Q9H239 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
MMP28Q9H239 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.87■□□□□ 0.61
MMP28Q9H239 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.87■□□□□ 0.61
MMP28Q9H239 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.86■□□□□ 0.61
MMP28Q9H239 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
MMP28Q9H239 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.86■□□□□ 0.61
MMP28Q9H239 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.86■□□□□ 0.61
MMP28Q9H239 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MMP28Q9H239 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MMP28Q9H239 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
MMP28Q9H239 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.86■□□□□ 0.61
MMP28Q9H239 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.85■□□□□ 0.61
MMP28Q9H239 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.85■□□□□ 0.61
MMP28Q9H239 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.85■□□□□ 0.61
MMP28Q9H239 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.85■□□□□ 0.61
MMP28Q9H239 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.85■□□□□ 0.61
MMP28Q9H239 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.85■□□□□ 0.61
MMP28Q9H239 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.85■□□□□ 0.61
MMP28Q9H239 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MMP28Q9H239 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.84■□□□□ 0.61
MMP28Q9H239 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.84■□□□□ 0.61
MMP28Q9H239 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.84■□□□□ 0.61
MMP28Q9H239 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
MMP28Q9H239 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MMP28Q9H239 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
MMP28Q9H239 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MMP28Q9H239 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MMP28Q9H239 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
MMP28Q9H239 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
MMP28Q9H239 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.83■□□□□ 0.61
MMP28Q9H239 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
MMP28Q9H239 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MMP28Q9H239 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
MMP28Q9H239 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MMP28Q9H239 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MMP28Q9H239 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MMP28Q9H239 FEM1AP4-201ENST00000443167 1987 ntBASIC18.82■□□□□ 0.6
MMP28Q9H239 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.82■□□□□ 0.6
MMP28Q9H239 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MMP28Q9H239 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MMP28Q9H239 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms