Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 AL356441.2-201ENST00000443009 864 ntBASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF540Q8NDQ6 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF540Q8NDQ6 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF540Q8NDQ6 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF540Q8NDQ6 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
ZNF540Q8NDQ6 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF540Q8NDQ6 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF540Q8NDQ6 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF540Q8NDQ6 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 MIR4787-201ENST00000607364 84 ntBASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF540Q8NDQ6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF540Q8NDQ6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms