Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 AC123595.1-201ENST00000440769 1046 ntBASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA1Q9Y5I3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 SMUG1P1-201ENST00000590640 811 ntBASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA1Q9Y5I3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDHA1Q9Y5I3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA1Q9Y5I3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.06■■□□□ 1.6
PCDHA1Q9Y5I3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.05■■□□□ 1.6
PCDHA1Q9Y5I3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.04■■□□□ 1.6
PCDHA1Q9Y5I3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA1Q9Y5I3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 AC034268.1-201ENST00000441047 882 ntBASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 AL162430.1-201ENST00000480705 870 ntBASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 CCDC92B-201ENST00000575506 885 ntBASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 LINC02228-203ENST00000641970 1355 ntBASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 BX005040.4-201ENST00000637145 1518 ntBASIC25.02■■□□□ 1.6
PCDHA1Q9Y5I3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.01■■□□□ 1.59
PCDHA1Q9Y5I3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
PCDHA1Q9Y5I3 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
PCDHA1Q9Y5I3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA1Q9Y5I3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.01■■□□□ 1.59
PCDHA1Q9Y5I3 C9orf163-202ENST00000624034 2573 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L2-201ENST00000561772 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms