Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
VPS9D1Q9Y2B5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 EP400NL-214ENST00000641289 2402 ntBASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 AC087239.1-201ENST00000622671 572 ntBASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS9D1Q9Y2B5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VPS9D1Q9Y2B5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 SERBP1P1-201ENST00000396021 1160 ntBASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 AC136469.2-201ENST00000623944 1028 ntBASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS9D1Q9Y2B5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 AL136116.3-201ENST00000402907 1138 ntBASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 AC131212.1-201ENST00000613771 668 ntBASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS9D1Q9Y2B5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
VPS9D1Q9Y2B5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS9D1Q9Y2B5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS9D1Q9Y2B5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 PKD1P6-201ENST00000343738 4769 ntBASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS9D1Q9Y2B5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS9D1Q9Y2B5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms