Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
UBE3DQ7Z6J8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.77■□□□□ 0.91
UBE3DQ7Z6J8 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
UBE3DQ7Z6J8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 BX842568.3-201ENST00000418104 571 ntBASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UBE3DQ7Z6J8 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 AL031432.3-201ENST00000607698 485 ntBASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 AC068587.7-201ENST00000641602 218 ntBASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3DQ7Z6J8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 AL139246.5-201ENST00000606645 996 ntBASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 LINC00526-201ENST00000581067 1875 ntBASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
UBE3DQ7Z6J8 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 AP005435.1-201ENST00000529293 1178 ntBASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 AC233992.3-201ENST00000607491 485 ntBASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3DQ7Z6J8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3DQ7Z6J8 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 EDA-201ENST00000338901 1233 ntBASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 AP001330.3-201ENST00000520123 633 ntBASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 AC008764.7-201ENST00000593779 1081 ntBASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms