Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 AC022517.1-201ENST00000592429 346 ntBASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 AL137784.2-201ENST00000607332 1000 ntBASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 IKBKGP1-201ENST00000612193 1073 ntBASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV40A0A0B4J280 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 NTF6G-201ENST00000591094 616 ntBASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV40A0A0B4J280 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV40A0A0B4J280 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV40A0A0B4J280 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TRAV40A0A0B4J280 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV40A0A0B4J280 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV40A0A0B4J280 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 TPRG1LP1-201ENST00000598702 760 ntBASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 OXCT2P1-201ENST00000447263 1535 ntBASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 BX005040.4-201ENST00000637145 1518 ntBASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV40A0A0B4J280 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 SMUG1P1-201ENST00000590640 811 ntBASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms