Protein–RNA interactions for Protein: A0A0A0MS06

TRBV23-1, T-cell receptor beta variable 23-1 (non-functional) (Fragment), humanhuman

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV23-1A0A0A0MS06 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 DUSP8P3-201ENST00000399571 1760 ntBASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 MIR3181-201ENST00000578512 73 ntBASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRBV23-1A0A0A0MS06 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 SERBP1P1-201ENST00000396021 1160 ntBASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRBV23-1A0A0A0MS06 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 DUSP8P5-201ENST00000422884 1815 ntBASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRBV23-1A0A0A0MS06 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 UNC93B3-201ENST00000308076 687 ntBASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC096631.2-201ENST00000436136 790 ntBASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.34■□□□□ 0.53
TRBV23-1A0A0A0MS06 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.33■□□□□ 0.53
TRBV23-1A0A0A0MS06 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TRBV23-1A0A0A0MS06 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRBV23-1A0A0A0MS06 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRBV23-1A0A0A0MS06 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRBV23-1A0A0A0MS06 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRBV23-1A0A0A0MS06 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms