Protein–RNA interactions for Protein: Q9NYA1

SPHK1, Sphingosine kinase 1, humanhuman

Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPHK1Q9NYA1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.3■■□□□ 1
SPHK1Q9NYA1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SPHK1Q9NYA1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SPHK1Q9NYA1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
SPHK1Q9NYA1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPHK1Q9NYA1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPHK1Q9NYA1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 AC105265.2-201ENST00000467189 838 ntBASIC21.29■■□□□ 1
SPHK1Q9NYA1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.29■■□□□ 1
SPHK1Q9NYA1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.29■■□□□ 1
SPHK1Q9NYA1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPHK1Q9NYA1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPHK1Q9NYA1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.28■■□□□ 1
SPHK1Q9NYA1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.28■■□□□ 1
SPHK1Q9NYA1 ZNRF2P3-201ENST00000424200 374 ntBASIC21.28■■□□□ 1
SPHK1Q9NYA1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 AC126544.1-201ENST00000580842 1059 ntBASIC21.28■■□□□ 1
SPHK1Q9NYA1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SPHK1Q9NYA1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.28■■□□□ 1
SPHK1Q9NYA1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.28■■□□□ 1
SPHK1Q9NYA1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SPHK1Q9NYA1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SPHK1Q9NYA1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.27■■□□□ 1
SPHK1Q9NYA1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.27■■□□□ 1
SPHK1Q9NYA1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.27■■□□□ 1
SPHK1Q9NYA1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.27■■□□□ 1
SPHK1Q9NYA1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.27■■□□□ 1
SPHK1Q9NYA1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.27■■□□□ 1
SPHK1Q9NYA1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SPHK1Q9NYA1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SPHK1Q9NYA1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SPHK1Q9NYA1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SPHK1Q9NYA1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 C9orf163-202ENST00000624034 2573 ntBASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPHK1Q9NYA1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPHK1Q9NYA1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPHK1Q9NYA1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPHK1Q9NYA1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SPHK1Q9NYA1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SPHK1Q9NYA1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SPHK1Q9NYA1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms