Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.28■■□□□ 1
LSM1O15116 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
LSM1O15116 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.27■■□□□ 1
LSM1O15116 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LSM1O15116 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.27■■□□□ 1
LSM1O15116 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM1O15116 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
LSM1O15116 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
LSM1O15116 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.27■□□□□ 0.99
LSM1O15116 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
LSM1O15116 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.26■□□□□ 0.99
LSM1O15116 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LSM1O15116 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
LSM1O15116 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.26■□□□□ 0.99
LSM1O15116 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM1O15116 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 AC137767.1-201ENST00000602918 1920 ntBASIC21.25■□□□□ 0.99
LSM1O15116 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LSM1O15116 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.25■□□□□ 0.99
LSM1O15116 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.25■□□□□ 0.99
LSM1O15116 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.25■□□□□ 0.99
LSM1O15116 AC092028.1-203ENST00000608262 953 ntBASIC21.25■□□□□ 0.99
LSM1O15116 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.25■□□□□ 0.99
LSM1O15116 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LSM1O15116 AC092053.2-201ENST00000640557 1818 ntBASIC21.25■□□□□ 0.99
LSM1O15116 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.24■□□□□ 0.99
LSM1O15116 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.24■□□□□ 0.99
LSM1O15116 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LSM1O15116 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.24■□□□□ 0.99
LSM1O15116 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
LSM1O15116 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LSM1O15116 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM1O15116 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
LSM1O15116 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.23■□□□□ 0.99
LSM1O15116 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM1O15116 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.22■□□□□ 0.99
LSM1O15116 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
LSM1O15116 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 DUX4L4-201ENST00000566884 1269 ntBASIC21.22■□□□□ 0.99
LSM1O15116 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
LSM1O15116 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LSM1O15116 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM1O15116 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM1O15116 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.21■□□□□ 0.99
LSM1O15116 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM1O15116 Z92544.1-202ENST00000571933 1220 ntBASIC21.21■□□□□ 0.99
LSM1O15116 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LSM1O15116 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.21■□□□□ 0.99
LSM1O15116 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
LSM1O15116 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM1O15116 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
LSM1O15116 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM1O15116 C11orf96-202ENST00000528572 1834 ntBASIC21.2■□□□□ 0.98
LSM1O15116 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
LSM1O15116 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM1O15116 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms