Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SPCS2P3-201ENST00000500401 656 ntBASIC19.43■□□□□ 0.7
MMP28Q9H239 AC129492.7-201ENST00000622992 756 ntBASIC19.43■□□□□ 0.7
MMP28Q9H239 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.43■□□□□ 0.7
MMP28Q9H239 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.43■□□□□ 0.7
MMP28Q9H239 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.43■□□□□ 0.7
MMP28Q9H239 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.42■□□□□ 0.7
MMP28Q9H239 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
MMP28Q9H239 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
MMP28Q9H239 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 AC004987.1-201ENST00000428627 508 ntBASIC19.42■□□□□ 0.7
MMP28Q9H239 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.42■□□□□ 0.7
MMP28Q9H239 MIR6765-201ENST00000614092 87 ntBASIC19.42■□□□□ 0.7
MMP28Q9H239 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
MMP28Q9H239 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP28Q9H239 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MMP28Q9H239 AC092053.2-201ENST00000640557 1818 ntBASIC19.41■□□□□ 0.7
MMP28Q9H239 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.41■□□□□ 0.7
MMP28Q9H239 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MMP28Q9H239 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.41■□□□□ 0.7
MMP28Q9H239 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
MMP28Q9H239 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MMP28Q9H239 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 AC139530.1-201ENST00000575312 1977 ntBASIC19.41■□□□□ 0.7
MMP28Q9H239 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP28Q9H239 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MMP28Q9H239 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.4■□□□□ 0.7
MMP28Q9H239 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
MMP28Q9H239 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.4■□□□□ 0.7
MMP28Q9H239 ATP5G2P3-201ENST00000429083 425 ntBASIC19.4■□□□□ 0.7
MMP28Q9H239 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.4■□□□□ 0.7
MMP28Q9H239 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.4■□□□□ 0.7
MMP28Q9H239 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
MMP28Q9H239 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
MMP28Q9H239 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
MMP28Q9H239 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
MMP28Q9H239 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP28Q9H239 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MMP28Q9H239 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
MMP28Q9H239 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.39■□□□□ 0.69
MMP28Q9H239 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
MMP28Q9H239 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
MMP28Q9H239 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
MMP28Q9H239 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.39■□□□□ 0.69
MMP28Q9H239 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.39■□□□□ 0.69
MMP28Q9H239 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MMP28Q9H239 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.38■□□□□ 0.69
MMP28Q9H239 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MMP28Q9H239 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MMP28Q9H239 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MMP28Q9H239 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MMP28Q9H239 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
MMP28Q9H239 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
MMP28Q9H239 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.37■□□□□ 0.69
MMP28Q9H239 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.37■□□□□ 0.69
MMP28Q9H239 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
MMP28Q9H239 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MMP28Q9H239 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms