Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 AC090877.2-201ENST00000558441 1738 ntBASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
ZNF540Q8NDQ6 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF540Q8NDQ6 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF540Q8NDQ6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
ZNF540Q8NDQ6 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF540Q8NDQ6 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF540Q8NDQ6 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 FBXW4P1-201ENST00000426721 2239 ntBASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF540Q8NDQ6 AC139530.1-201ENST00000575312 1977 ntBASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF540Q8NDQ6 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 AC087393.1-201ENST00000582896 145 ntBASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF540Q8NDQ6 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 AC103834.1-201ENST00000520383 144 ntBASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF540Q8NDQ6 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 AL022069.1-201ENST00000568025 1636 ntBASIC20.34■□□□□ 0.85
ZNF540Q8NDQ6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms