Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM1O15116 AL031848.2-201ENST00000607670 837 ntBASIC21.43■■□□□ 1.02
LSM1O15116 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM1O15116 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM1O15116 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 AC127496.7-201ENST00000625110 1798 ntBASIC21.43■■□□□ 1.02
LSM1O15116 AC242852.2-201ENST00000615738 1807 ntBASIC21.43■■□□□ 1.02
LSM1O15116 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
LSM1O15116 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LSM1O15116 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LSM1O15116 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LSM1O15116 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LSM1O15116 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LSM1O15116 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.41■■□□□ 1.02
LSM1O15116 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
LSM1O15116 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
LSM1O15116 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.41■■□□□ 1.02
LSM1O15116 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
LSM1O15116 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM1O15116 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
LSM1O15116 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.4■■□□□ 1.02
LSM1O15116 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM1O15116 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.39■■□□□ 1.02
LSM1O15116 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LSM1O15116 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.39■■□□□ 1.01
LSM1O15116 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LSM1O15116 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 AC021242.3-201ENST00000607598 1377 ntBASIC21.38■■□□□ 1.01
LSM1O15116 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
LSM1O15116 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.38■■□□□ 1.01
LSM1O15116 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LSM1O15116 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 MIR6722-201ENST00000617286 78 ntBASIC21.38■■□□□ 1.01
LSM1O15116 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
LSM1O15116 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.38■■□□□ 1.01
LSM1O15116 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
LSM1O15116 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.37■■□□□ 1.01
LSM1O15116 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
LSM1O15116 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.37■■□□□ 1.01
LSM1O15116 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.37■■□□□ 1.01
LSM1O15116 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LSM1O15116 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
LSM1O15116 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
LSM1O15116 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.36■■□□□ 1.01
LSM1O15116 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.36■■□□□ 1.01
LSM1O15116 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LSM1O15116 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.36■■□□□ 1.01
LSM1O15116 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.36■■□□□ 1.01
LSM1O15116 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
LSM1O15116 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LSM1O15116 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LSM1O15116 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LSM1O15116 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.35■■□□□ 1.01
LSM1O15116 AC005703.6-201ENST00000623265 1329 ntBASIC21.35■■□□□ 1.01
LSM1O15116 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LSM1O15116 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LSM1O15116 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM1O15116 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms