Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 AC022517.1-201ENST00000592429 346 ntBASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 AL499627.2-201ENST00000606283 725 ntBASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 AC144652.1-201ENST00000609974 1624 ntBASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.44■■□□□ 1.18
HDDC3Q8N4P3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 AL139125.2-201ENST00000623134 1869 ntBASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HDDC3Q8N4P3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 IKBKGP1-201ENST00000612193 1073 ntBASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 LINC01529-204ENST00000636474 1715 ntBASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HDDC3Q8N4P3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HDDC3Q8N4P3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 AC004812.2-201ENST00000611079 2094 ntBASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 TSPY26P-201ENST00000476365 1326 ntBASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.4■■□□□ 1.18
HDDC3Q8N4P3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HDDC3Q8N4P3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.39■■□□□ 1.18
HDDC3Q8N4P3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HDDC3Q8N4P3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HDDC3Q8N4P3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HDDC3Q8N4P3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 YBX1P1-201ENST00000445822 960 ntBASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HDDC3Q8N4P3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms