Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
LSM1O15116 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.49■■□□□ 1.03
LSM1O15116 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.49■■□□□ 1.03
LSM1O15116 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.49■■□□□ 1.03
LSM1O15116 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.49■■□□□ 1.03
LSM1O15116 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.49■■□□□ 1.03
LSM1O15116 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.49■■□□□ 1.03
LSM1O15116 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.49■■□□□ 1.03
LSM1O15116 AC137630.3-201ENST00000607245 391 ntBASIC21.49■■□□□ 1.03
LSM1O15116 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.49■■□□□ 1.03
LSM1O15116 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM1O15116 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.49■■□□□ 1.03
LSM1O15116 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LSM1O15116 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LSM1O15116 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
LSM1O15116 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
LSM1O15116 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LSM1O15116 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.48■■□□□ 1.03
LSM1O15116 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.48■■□□□ 1.03
LSM1O15116 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
LSM1O15116 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.48■■□□□ 1.03
LSM1O15116 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.48■■□□□ 1.03
LSM1O15116 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.48■■□□□ 1.03
LSM1O15116 ESRRAP2-201ENST00000418437 1549 ntBASIC21.48■■□□□ 1.03
LSM1O15116 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.48■■□□□ 1.03
LSM1O15116 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LSM1O15116 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
LSM1O15116 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.47■■□□□ 1.03
LSM1O15116 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LSM1O15116 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LSM1O15116 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 LINC00565-201ENST00000562710 2331 ntBASIC21.46■■□□□ 1.03
LSM1O15116 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.46■■□□□ 1.03
LSM1O15116 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.46■■□□□ 1.03
LSM1O15116 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.46■■□□□ 1.03
LSM1O15116 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
LSM1O15116 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM1O15116 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
LSM1O15116 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.45■■□□□ 1.02
LSM1O15116 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.45■■□□□ 1.02
LSM1O15116 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.45■■□□□ 1.02
LSM1O15116 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
LSM1O15116 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
LSM1O15116 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.45■■□□□ 1.02
LSM1O15116 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
LSM1O15116 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LSM1O15116 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.45■■□□□ 1.02
LSM1O15116 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LSM1O15116 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 AC144652.1-201ENST00000609974 1624 ntBASIC21.44■■□□□ 1.02
LSM1O15116 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.44■■□□□ 1.02
LSM1O15116 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LSM1O15116 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.44■■□□□ 1.02
LSM1O15116 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.44■■□□□ 1.02
LSM1O15116 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
LSM1O15116 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LSM1O15116 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM1O15116 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.43■■□□□ 1.02
LSM1O15116 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM1O15116 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.43■■□□□ 1.02
LSM1O15116 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
LSM1O15116 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LSM1O15116 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms