Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.58■■□□□ 1.05
LSM1O15116 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
LSM1O15116 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.58■■□□□ 1.05
LSM1O15116 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 AL033527.3-201ENST00000566366 1196 ntBASIC21.58■■□□□ 1.05
LSM1O15116 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.58■■□□□ 1.05
LSM1O15116 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.04
LSM1O15116 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
LSM1O15116 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LSM1O15116 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
LSM1O15116 GUSBP5-202ENST00000510805 1989 ntBASIC21.57■■□□□ 1.04
LSM1O15116 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LSM1O15116 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
LSM1O15116 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.57■■□□□ 1.04
LSM1O15116 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.57■■□□□ 1.04
LSM1O15116 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.57■■□□□ 1.04
LSM1O15116 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LSM1O15116 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
LSM1O15116 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.57■■□□□ 1.04
LSM1O15116 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.56■■□□□ 1.04
LSM1O15116 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM1O15116 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LSM1O15116 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LSM1O15116 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
LSM1O15116 AC103724.3-201ENST00000564481 992 ntBASIC21.55■■□□□ 1.04
LSM1O15116 SNX5-217ENST00000606557 1087 ntBASIC21.55■■□□□ 1.04
LSM1O15116 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LSM1O15116 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LSM1O15116 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LSM1O15116 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LSM1O15116 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LSM1O15116 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
LSM1O15116 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
LSM1O15116 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
LSM1O15116 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LSM1O15116 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.54■■□□□ 1.04
LSM1O15116 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LSM1O15116 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LSM1O15116 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.54■■□□□ 1.04
LSM1O15116 AL353803.4-201ENST00000565882 1934 ntBASIC21.54■■□□□ 1.04
LSM1O15116 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LSM1O15116 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.54■■□□□ 1.04
LSM1O15116 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LSM1O15116 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.53■■□□□ 1.04
LSM1O15116 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LSM1O15116 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
LSM1O15116 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.53■■□□□ 1.04
LSM1O15116 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.53■■□□□ 1.04
LSM1O15116 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.53■■□□□ 1.04
LSM1O15116 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.53■■□□□ 1.04
LSM1O15116 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LSM1O15116 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LSM1O15116 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LSM1O15116 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
LSM1O15116 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LSM1O15116 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 KRT8P33-201ENST00000508125 1423 ntBASIC21.52■■□□□ 1.04
LSM1O15116 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM1O15116 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
LSM1O15116 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.52■■□□□ 1.03
LSM1O15116 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LSM1O15116 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.51■■□□□ 1.03
LSM1O15116 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.51■■□□□ 1.03
LSM1O15116 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.51■■□□□ 1.03
LSM1O15116 AL024507.2-201ENST00000606070 2574 ntBASIC21.5■■□□□ 1.03
LSM1O15116 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.5■■□□□ 1.03
LSM1O15116 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.5■■□□□ 1.03
LSM1O15116 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.5■■□□□ 1.03
LSM1O15116 LINC00526-201ENST00000581067 1875 ntBASIC21.5■■□□□ 1.03
LSM1O15116 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.5■■□□□ 1.03
LSM1O15116 ECEL1P1-201ENST00000373592 1742 ntBASIC21.5■■□□□ 1.03
LSM1O15116 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
LSM1O15116 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
LSM1O15116 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM1O15116 YBX1P4-201ENST00000392794 808 ntBASIC21.5■■□□□ 1.03
LSM1O15116 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.5■■□□□ 1.03
LSM1O15116 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms