Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 STXBP3-204ENST00000483586 561 ntTSL 227.47■■□□□ 1.993e-7■■□□□ 13.8
NPM1P06748 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.183e-7■■□□□ 13.8
NPM1P06748 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC29.3■■■□□ 2.281e-6■■□□□ 13.5
NPM1P06748 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.011e-6■■□□□ 13.5
NPM1P06748 HSP90B1-203ENST00000548462 3032 ntTSL 215.52■□□□□ 0.071e-6■■□□□ 13.5
NPM1P06748 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.251e-6■■□□□ 13.4
NPM1P06748 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.071e-6■■□□□ 13.4
NPM1P06748 HSP90AA1-210ENST00000560130 488 ntTSL 211.9□□□□□ -0.56e-37■■□□□ 12.8
NPM1P06748 GAS5-209ENST00000430245 723 ntTSL 3 BASIC22.56■■□□□ 1.21e-27■■□□□ 12.8
NPM1P06748 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC17.67■□□□□ 0.421e-27■■□□□ 12.8
NPM1P06748 GAS5-203ENST00000416952 799 ntTSL 216.09■□□□□ 0.171e-27■■□□□ 12.8
NPM1P06748 GAS5-214ENST00000436656 822 ntTSL 316.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-216ENST00000443799 897 ntTSL 516.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-224ENST00000454068 688 ntTSL 5 BASIC15.72■□□□□ 0.111e-27■■□□□ 12.8
NPM1P06748 GAS5-210ENST00000431268 1698 ntTSL 214.5□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-229ENST00000458220 469 ntTSL 214.49□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-219ENST00000449289 542 ntTSL 3 BASIC13.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-220ENST00000449589 712 ntTSL 313.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-226ENST00000455838 632 ntTSL 213.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-211ENST00000432536 959 ntTSL 2 BASIC12.82□□□□□ -0.361e-27■■□□□ 12.8
NPM1P06748 GAS5-227ENST00000456293 583 ntTSL 311.88□□□□□ -0.511e-27■■□□□ 12.8
NPM1P06748 GAS5-204ENST00000421068 1060 ntTSL 211.25□□□□□ -0.611e-27■■□□□ 12.8
NPM1P06748 GAS5-228ENST00000456812 723 ntTSL 311.2□□□□□ -0.621e-27■■□□□ 12.8
NPM1P06748 GAS5-206ENST00000422183 745 ntTSL 210.81□□□□□ -0.681e-27■■□□□ 12.8
NPM1P06748 GAS5-201ENST00000412059 979 ntTSL 510.31□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-215ENST00000442067 1114 ntTSL 210.3□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-218ENST00000448718 565 ntTSL 2 BASIC9.97□□□□□ -0.811e-27■■□□□ 12.8
NPM1P06748 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC9.34□□□□□ -0.911e-27■■□□□ 12.8
NPM1P06748 GAS5-223ENST00000452197 483 ntTSL 3 BASIC8.96□□□□□ -0.981e-27■■□□□ 12.8
NPM1P06748 GAS5-208ENST00000425771 242 ntTSL 3 BASIC7.95□□□□□ -1.141e-27■■□□□ 12.8
NPM1P06748 GAS5-205ENST00000422008 497 ntTSL 37.23□□□□□ -1.251e-27■■□□□ 12.8
NPM1P06748 GAS5-213ENST00000436285 772 ntTSL 26.58□□□□□ -1.361e-27■■□□□ 12.8
NPM1P06748 HAT1-204ENST00000457761 1642 ntTSL 1 (best)14.88□□□□□ -0.031e-6■■□□□ 12.8
NPM1P06748 HAT1-203ENST00000412731 1567 ntTSL 1 (best)13.19□□□□□ -0.31e-6■■□□□ 12.8
NPM1P06748 HAT1-206ENST00000494601 3845 ntTSL 1 (best)12.15□□□□□ -0.461e-6■■□□□ 12.8
NPM1P06748 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-6■■□□□ 12.8
NPM1P06748 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC29.78■■■□□ 2.363e-7■■□□□ 12.7
NPM1P06748 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.971e-6■■□□□ 12.5
NPM1P06748 HSP90B1-209ENST00000552051 581 ntTSL 215.26■□□□□ 0.032e-8■■□□□ 12.3
NPM1P06748 METAP2-211ENST00000553151 564 ntTSL 526.92■■□□□ 1.91e-8■■□□□ 11.5
NPM1P06748 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC22.73■■□□□ 1.231e-8■■□□□ 11.5
NPM1P06748 METAP2-203ENST00000535095 2431 ntTSL 220.8■□□□□ 0.921e-8■■□□□ 11.5
NPM1P06748 METAP2-209ENST00000550777 1779 ntTSL 5 BASIC19.04■□□□□ 0.641e-8■■□□□ 11.5
NPM1P06748 METAP2-201ENST00000261220 1836 ntTSL 2 BASIC17.1■□□□□ 0.331e-8■■□□□ 11.5
NPM1P06748 METAP2-210ENST00000551840 1874 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.111e-8■■□□□ 11.5
NPM1P06748 METAP2-208ENST00000549808 538 ntTSL 413.23□□□□□ -0.291e-8■■□□□ 11.5
NPM1P06748 METAP2-204ENST00000546478 232 ntTSL 212.73□□□□□ -0.371e-8■■□□□ 11.5
NPM1P06748 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.41e-8■■□□□ 11.5
NPM1P06748 EGFL7-207ENST00000492862 723 ntTSL 531.07■■■□□ 2.561e-5■□□□□ 11.2
NPM1P06748 EGFL7-205ENST00000490469 456 ntTSL 528.35■■■□□ 2.131e-5■□□□□ 11.2
NPM1P06748 HSP90B1-207ENST00000550595 694 ntTSL 212.73□□□□□ -0.371e-6■□□□□ 11
NPM1P06748 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.034e-9■□□□□ 11
NPM1P06748 NUCKS1-202ENST00000464938 228 ntTSL 25.67□□□□□ -1.54e-9■□□□□ 11
NPM1P06748 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC28.6■■■□□ 2.175e-7■□□□□ 10.7
NPM1P06748 ANP32E-203ENST00000436748 1339 ntTSL 2 BASIC16.95■□□□□ 0.35e-7■□□□□ 10.7
NPM1P06748 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC14.37□□□□□ -0.115e-7■□□□□ 10.7
NPM1P06748 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC13.81□□□□□ -0.25e-7■□□□□ 10.7
NPM1P06748 ANP32E-207ENST00000534437 616 ntTSL 313.06□□□□□ -0.325e-7■□□□□ 10.7
NPM1P06748 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC12.38□□□□□ -0.435e-7■□□□□ 10.7
NPM1P06748 ANP32E-208ENST00000583931 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.525e-7■□□□□ 10.7
NPM1P06748 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC5.29□□□□□ -1.565e-7■□□□□ 10.7
NPM1P06748 HNRNPM-208ENST00000597270 1147 ntTSL 235.24■■■■□ 3.234e-6■□□□□ 10.5
NPM1P06748 HNRNPM-204ENST00000594907 1078 ntTSL 532.81■■■□□ 2.844e-6■□□□□ 10.5
NPM1P06748 HNRNPM-213ENST00000600092 1086 ntTSL 231.24■■■□□ 2.594e-6■□□□□ 10.5
NPM1P06748 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.444e-6■□□□□ 10.5
NPM1P06748 HNRNPM-214ENST00000600806 2373 ntTSL 526.63■■□□□ 1.854e-6■□□□□ 10.5
NPM1P06748 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.84e-6■□□□□ 10.5
NPM1P06748 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.534e-6■□□□□ 10.5
NPM1P06748 HNRNPM-210ENST00000598367 298 ntTSL 518.9■□□□□ 0.624e-6■□□□□ 10.5
NPM1P06748 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.341e-323■□□□□ 10.4
NPM1P06748 SYCP2L-202ENST00000341041 3069 ntTSL 216.88■□□□□ 0.291e-323■□□□□ 10.4
NPM1P06748 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.281e-323■□□□□ 10.4
NPM1P06748 SNX5-206ENST00000469704 696 ntTSL 344.83■■■■■ 4.776e-41■□□□□ 10.1
NPM1P06748 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.756e-41■□□□□ 10.1
NPM1P06748 SNX5-203ENST00000419004 778 ntTSL 527.94■■■□□ 2.066e-41■□□□□ 10.1
NPM1P06748 SNX5-204ENST00000431277 840 ntTSL 526.64■■□□□ 1.866e-41■□□□□ 10.1
NPM1P06748 OVOL2-204ENST00000486776 550 ntTSL 323.35■■□□□ 1.336e-41■□□□□ 10.1
NPM1P06748 SNX5-214ENST00000490175 2025 ntTSL 1 (best)22.41■■□□□ 1.186e-41■□□□□ 10.1
NPM1P06748 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.056e-41■□□□□ 10.1
NPM1P06748 SNX5-207ENST00000474883 695 ntTSL 59.97□□□□□ -0.816e-41■□□□□ 10.1
NPM1P06748 SNORD17-201ENST00000390930 237 ntBASIC5.71□□□□□ -1.56e-41■□□□□ 10.1
NPM1P06748 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.992e-7■□□□□ 10.1
NPM1P06748 HSP90B1-202ENST00000540297 590 ntTSL 332.82■■■□□ 2.841e-7■□□□□ 9.6
NPM1P06748 HSP90B1-204ENST00000548622 839 ntTSL 230.42■■■□□ 2.461e-7■□□□□ 9.6
NPM1P06748 HSP90B1-205ENST00000549334 581 ntTSL 429.37■■■□□ 2.291e-7■□□□□ 9.6
NPM1P06748 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC41.82■■■■■ 4.294e-9■□□□□ 9.6
NPM1P06748 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC24.73■■□□□ 1.554e-9■□□□□ 9.6
NPM1P06748 THAP9-AS1-202ENST00000504520 2770 ntTSL 1 (best) BASIC16.97■□□□□ 0.314e-13■□□□□ 9.6
NPM1P06748 SEC31A-220ENST00000507051 458 ntTSL 416.4■□□□□ 0.224e-13■□□□□ 9.6
NPM1P06748 SEC31A-218ENST00000506495 541 ntTSL 415.74■□□□□ 0.114e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-208ENST00000508772 566 ntTSL 415.74■□□□□ 0.114e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-210ENST00000511271 516 ntTSL 214.61□□□□□ -0.074e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC13.1□□□□□ -0.314e-13■□□□□ 9.6
NPM1P06748 THAP9-AS1-211ENST00000512932 971 ntTSL 212.31□□□□□ -0.444e-13■□□□□ 9.6
NPM1P06748 SEC31A-222ENST00000507676 551 ntTSL 411.95□□□□□ -0.54e-13■□□□□ 9.6
NPM1P06748 SEC31A-211ENST00000503210 553 ntTSL 410.82□□□□□ -0.684e-13■□□□□ 9.6
NPM1P06748 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.96□□□□□ -1.34e-13■□□□□ 9.6
NPM1P06748 HNRNPD-205ENST00000507010 748 ntTSL 342.49■■■■■ 4.391e-6■□□□□ 9.3
NPM1P06748 LARP1-211ENST00000521577 817 ntTSL 539.93■■■■□ 3.981e-6■□□□□ 9.3
NPM1P06748 HNRNPD-204ENST00000503822 607 ntTSL 539.5■■■■□ 3.911e-6■□□□□ 9.3
Retrieved 100 of 408 protein–RNA pairs in 48.7 ms