Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 MIR663A-201ENST00000385250 93 ntBASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 KRT18P6-201ENST00000555540 1265 ntBASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 AL354811.1-201ENST00000610286 706 ntBASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
ALMS1Q8TCU4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 AC016769.1-201ENST00000409132 1010 ntBASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 TPRG1LP1-201ENST00000598702 760 ntBASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 AL109923.1-201ENST00000618799 583 ntBASIC15.5■□□□□ 0.07
ALMS1Q8TCU4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 AC026185.1-201ENST00000445748 174 ntBASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 AL499627.2-201ENST00000606283 725 ntBASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ALMS1Q8TCU4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ALMS1Q8TCU4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 DBI-210ENST00000542275 757 ntTSL 5 BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC15.47■□□□□ 0.07
ALMS1Q8TCU4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 TSPY20P-201ENST00000450910 630 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 PPP1R14BP3-201ENST00000509033 445 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 AC137761.2-201ENST00000561729 223 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 AC145350.3-201ENST00000569033 163 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 AC006970.2-201ENST00000450065 779 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 AC008687.6-201ENST00000596318 630 ntBASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.46■□□□□ 0.07
ALMS1Q8TCU4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ALMS1Q8TCU4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.46■□□□□ 0.06
ALMS1Q8TCU4 AC091060.1-201ENST00000623524 1766 ntBASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 MIR4651-201ENST00000582622 73 ntBASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
ALMS1Q8TCU4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms