Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TFF3Q07654 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TFF3Q07654 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TFF3Q07654 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.88■□□□□ 0.77
TFF3Q07654 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.88■□□□□ 0.77
TFF3Q07654 AC034268.1-201ENST00000441047 882 ntBASIC19.88■□□□□ 0.77
TFF3Q07654 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TFF3Q07654 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.88■□□□□ 0.77
TFF3Q07654 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.88■□□□□ 0.77
TFF3Q07654 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.88■□□□□ 0.77
TFF3Q07654 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TFF3Q07654 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TFF3Q07654 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TFF3Q07654 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.87■□□□□ 0.77
TFF3Q07654 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.87■□□□□ 0.77
TFF3Q07654 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TFF3Q07654 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.87■□□□□ 0.77
TFF3Q07654 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TFF3Q07654 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.87■□□□□ 0.77
TFF3Q07654 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TFF3Q07654 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
TFF3Q07654 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TFF3Q07654 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TFF3Q07654 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
TFF3Q07654 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
TFF3Q07654 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TFF3Q07654 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.86■□□□□ 0.77
TFF3Q07654 YBX1P1-201ENST00000445822 960 ntBASIC19.86■□□□□ 0.77
TFF3Q07654 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.86■□□□□ 0.77
TFF3Q07654 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TFF3Q07654 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.86■□□□□ 0.77
TFF3Q07654 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TFF3Q07654 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.85■□□□□ 0.77
TFF3Q07654 RARRES2P11-201ENST00000635158 484 ntBASIC19.85■□□□□ 0.77
TFF3Q07654 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TFF3Q07654 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
TFF3Q07654 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.84■□□□□ 0.77
TFF3Q07654 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TFF3Q07654 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.84■□□□□ 0.77
TFF3Q07654 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.84■□□□□ 0.77
TFF3Q07654 AC022517.1-201ENST00000592429 346 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 pRNA.6-201ENST00000610482 90 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 pRNA.5-201ENST00000612139 90 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 pRNA.11-201ENST00000618423 90 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 pRNA.13-201ENST00000619112 90 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.84■□□□□ 0.77
TFF3Q07654 AL031602.1-201ENST00000633169 911 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 DUSP8P4-201ENST00000399538 1761 ntBASIC19.84■□□□□ 0.77
TFF3Q07654 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
TFF3Q07654 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
TFF3Q07654 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TFF3Q07654 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.84■□□□□ 0.77
TFF3Q07654 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.84■□□□□ 0.77
TFF3Q07654 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
TFF3Q07654 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TFF3Q07654 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TFF3Q07654 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TFF3Q07654 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.83■□□□□ 0.77
TFF3Q07654 AC090192.1-201ENST00000517740 490 ntBASIC19.83■□□□□ 0.77
TFF3Q07654 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
TFF3Q07654 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.83■□□□□ 0.77
TFF3Q07654 IKBKGP1-201ENST00000612193 1073 ntBASIC19.83■□□□□ 0.77
TFF3Q07654 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TFF3Q07654 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TFF3Q07654 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TFF3Q07654 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TFF3Q07654 AL161729.1-201ENST00000604104 1402 ntBASIC19.83■□□□□ 0.76
TFF3Q07654 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.83■□□□□ 0.76
TFF3Q07654 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.83■□□□□ 0.76
TFF3Q07654 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.83■□□□□ 0.76
TFF3Q07654 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TFF3Q07654 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
TFF3Q07654 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TFF3Q07654 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TFF3Q07654 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TFF3Q07654 KRT18P5-201ENST00000436075 1291 ntBASIC19.82■□□□□ 0.76
TFF3Q07654 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.82■□□□□ 0.76
TFF3Q07654 AC126544.1-201ENST00000580842 1059 ntBASIC19.82■□□□□ 0.76
TFF3Q07654 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TFF3Q07654 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TFF3Q07654 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.82■□□□□ 0.76
TFF3Q07654 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
TFF3Q07654 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.81■□□□□ 0.76
TFF3Q07654 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.81■□□□□ 0.76
TFF3Q07654 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.81■□□□□ 0.76
TFF3Q07654 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.81■□□□□ 0.76
TFF3Q07654 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
TFF3Q07654 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms