Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM1O15116 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.76■■□□□ 1.07
LSM1O15116 MIR4281-201ENST00000580852 62 ntBASIC21.76■■□□□ 1.07
LSM1O15116 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
LSM1O15116 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
LSM1O15116 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 C1orf229-201ENST00000623686 2258 ntBASIC21.75■■□□□ 1.07
LSM1O15116 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.75■■□□□ 1.07
LSM1O15116 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
LSM1O15116 THA1P-201ENST00000590384 1145 ntBASIC21.75■■□□□ 1.07
LSM1O15116 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LSM1O15116 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.74■■□□□ 1.07
LSM1O15116 TSPY13P-201ENST00000338964 914 ntBASIC21.74■■□□□ 1.07
LSM1O15116 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.74■■□□□ 1.07
LSM1O15116 AC010980.1-201ENST00000587192 1142 ntBASIC21.74■■□□□ 1.07
LSM1O15116 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.74■■□□□ 1.07
LSM1O15116 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LSM1O15116 AC233723.2-201ENST00000623798 2106 ntBASIC21.74■■□□□ 1.07
LSM1O15116 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 AL117328.2-201ENST00000624617 1940 ntBASIC21.74■■□□□ 1.07
LSM1O15116 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.74■■□□□ 1.07
LSM1O15116 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
LSM1O15116 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM1O15116 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM1O15116 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LSM1O15116 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.73■■□□□ 1.07
LSM1O15116 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.73■■□□□ 1.07
LSM1O15116 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM1O15116 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LSM1O15116 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.73■■□□□ 1.07
LSM1O15116 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.73■■□□□ 1.07
LSM1O15116 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM1O15116 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.72■■□□□ 1.07
LSM1O15116 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.72■■□□□ 1.07
LSM1O15116 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM1O15116 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
LSM1O15116 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
LSM1O15116 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LSM1O15116 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LSM1O15116 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LSM1O15116 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.71■■□□□ 1.07
LSM1O15116 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
LSM1O15116 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LSM1O15116 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.71■■□□□ 1.07
LSM1O15116 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.7■■□□□ 1.07
LSM1O15116 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.7■■□□□ 1.06
LSM1O15116 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LSM1O15116 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.7■■□□□ 1.06
LSM1O15116 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LSM1O15116 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.7■■□□□ 1.06
LSM1O15116 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.69■■□□□ 1.06
LSM1O15116 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.69■■□□□ 1.06
LSM1O15116 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.69■■□□□ 1.06
LSM1O15116 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LSM1O15116 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LSM1O15116 AC004448.1-201ENST00000458332 883 ntBASIC21.69■■□□□ 1.06
LSM1O15116 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.69■■□□□ 1.06
LSM1O15116 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.69■■□□□ 1.06
LSM1O15116 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.69■■□□□ 1.06
LSM1O15116 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.69■■□□□ 1.06
LSM1O15116 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
LSM1O15116 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LSM1O15116 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LSM1O15116 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LSM1O15116 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LSM1O15116 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LSM1O15116 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LSM1O15116 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LSM1O15116 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.68■■□□□ 1.06
LSM1O15116 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms