Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 ZNRF2P3-201ENST00000424200 374 ntBASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 AC006455.2-201ENST00000429931 906 ntBASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 AC011298.3-201ENST00000615796 283 ntBASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV40A0A0B4J280 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 AC105265.2-201ENST00000467189 838 ntBASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 AL138724.1-201ENST00000606771 1088 ntBASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV40A0A0B4J280 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV40A0A0B4J280 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV40A0A0B4J280 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV40A0A0B4J280 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 MIR939-201ENST00000401314 82 ntBASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV40A0A0B4J280 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 AC091305.1-201ENST00000479476 895 ntBASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV40A0A0B4J280 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 AC027682.1-201ENST00000562846 899 ntBASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 AL136967.2-201ENST00000623968 743 ntBASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV40A0A0B4J280 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV40A0A0B4J280 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms