Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VMP1Q96GC9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VMP1Q96GC9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
VMP1Q96GC9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VMP1Q96GC9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.61■■□□□ 1.05
VMP1Q96GC9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.61■■□□□ 1.05
VMP1Q96GC9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.61■■□□□ 1.05
VMP1Q96GC9 AC092028.1-203ENST00000608262 953 ntBASIC21.61■■□□□ 1.05
VMP1Q96GC9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VMP1Q96GC9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
VMP1Q96GC9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VMP1Q96GC9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
VMP1Q96GC9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.6■■□□□ 1.05
VMP1Q96GC9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.6■■□□□ 1.05
VMP1Q96GC9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
VMP1Q96GC9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VMP1Q96GC9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.59■■□□□ 1.05
VMP1Q96GC9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
VMP1Q96GC9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
VMP1Q96GC9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.59■■□□□ 1.05
VMP1Q96GC9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VMP1Q96GC9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.58■■□□□ 1.05
VMP1Q96GC9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
VMP1Q96GC9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VMP1Q96GC9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.58■■□□□ 1.05
VMP1Q96GC9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.58■■□□□ 1.05
VMP1Q96GC9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VMP1Q96GC9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
VMP1Q96GC9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VMP1Q96GC9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 TSPY9P-201ENST00000440215 945 ntBASIC21.57■■□□□ 1.04
VMP1Q96GC9 TSPY11P-201ENST00000442607 1045 ntBASIC21.57■■□□□ 1.04
VMP1Q96GC9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VMP1Q96GC9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VMP1Q96GC9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VMP1Q96GC9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VMP1Q96GC9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.56■■□□□ 1.04
VMP1Q96GC9 UNC93B8-201ENST00000511903 705 ntBASIC21.56■■□□□ 1.04
VMP1Q96GC9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.56■■□□□ 1.04
VMP1Q96GC9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.56■■□□□ 1.04
VMP1Q96GC9 DUSP8P5-201ENST00000422884 1815 ntBASIC21.56■■□□□ 1.04
VMP1Q96GC9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VMP1Q96GC9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VMP1Q96GC9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VMP1Q96GC9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VMP1Q96GC9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VMP1Q96GC9 AL356441.2-201ENST00000443009 864 ntBASIC21.55■■□□□ 1.04
VMP1Q96GC9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
VMP1Q96GC9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VMP1Q96GC9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VMP1Q96GC9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VMP1Q96GC9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.54■■□□□ 1.04
VMP1Q96GC9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VMP1Q96GC9 LINC01124-201ENST00000409786 2117 ntBASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms