Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 AC091060.1-201ENST00000623524 1766 ntBASIC24.77■■□□□ 1.56
TTC3P53804 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
TTC3P53804 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TTC3P53804 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.76■■□□□ 1.55
TTC3P53804 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.76■■□□□ 1.55
TTC3P53804 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
TTC3P53804 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.76■■□□□ 1.55
TTC3P53804 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TTC3P53804 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.76■■□□□ 1.55
TTC3P53804 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
TTC3P53804 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TTC3P53804 AL162430.1-201ENST00000480705 870 ntBASIC24.75■■□□□ 1.55
TTC3P53804 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
TTC3P53804 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
TTC3P53804 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
TTC3P53804 IRS3P-201ENST00000223076 1006 ntBASIC24.74■■□□□ 1.55
TTC3P53804 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.74■■□□□ 1.55
TTC3P53804 AC136469.2-201ENST00000623944 1028 ntBASIC24.74■■□□□ 1.55
TTC3P53804 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TTC3P53804 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
TTC3P53804 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.74■■□□□ 1.55
TTC3P53804 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
TTC3P53804 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TTC3P53804 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TTC3P53804 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.74■■□□□ 1.55
TTC3P53804 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.74■■□□□ 1.55
TTC3P53804 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.74■■□□□ 1.55
TTC3P53804 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC3P53804 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.73■■□□□ 1.55
TTC3P53804 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC3P53804 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
TTC3P53804 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TTC3P53804 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC3P53804 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.73■■□□□ 1.55
TTC3P53804 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TTC3P53804 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.72■■□□□ 1.55
TTC3P53804 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TTC3P53804 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TTC3P53804 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.71■■□□□ 1.55
TTC3P53804 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TTC3P53804 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TTC3P53804 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.71■■□□□ 1.55
TTC3P53804 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TTC3P53804 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
TTC3P53804 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
TTC3P53804 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.7■■□□□ 1.55
TTC3P53804 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.55
TTC3P53804 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.7■■□□□ 1.55
TTC3P53804 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.7■■□□□ 1.54
TTC3P53804 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.7■■□□□ 1.54
TTC3P53804 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TTC3P53804 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
TTC3P53804 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.69■■□□□ 1.54
TTC3P53804 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.69■■□□□ 1.54
TTC3P53804 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.69■■□□□ 1.54
TTC3P53804 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
TTC3P53804 BX842568.3-201ENST00000418104 571 ntBASIC24.69■■□□□ 1.54
TTC3P53804 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TTC3P53804 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.69■■□□□ 1.54
TTC3P53804 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
TTC3P53804 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 AC034268.1-201ENST00000441047 882 ntBASIC24.68■■□□□ 1.54
TTC3P53804 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.68■■□□□ 1.54
TTC3P53804 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
TTC3P53804 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.68■■□□□ 1.54
TTC3P53804 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TTC3P53804 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.68■■□□□ 1.54
TTC3P53804 AC233992.3-201ENST00000607491 485 ntBASIC24.68■■□□□ 1.54
TTC3P53804 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
TTC3P53804 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.67■■□□□ 1.54
TTC3P53804 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TTC3P53804 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.67■■□□□ 1.54
TTC3P53804 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.67■■□□□ 1.54
TTC3P53804 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
TTC3P53804 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.66■■□□□ 1.54
TTC3P53804 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TTC3P53804 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TTC3P53804 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TTC3P53804 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.66■■□□□ 1.54
TTC3P53804 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.66■■□□□ 1.54
TTC3P53804 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TTC3P53804 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TTC3P53804 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
TTC3P53804 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.65■■□□□ 1.54
TTC3P53804 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
TTC3P53804 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TTC3P53804 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.65■■□□□ 1.54
TTC3P53804 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TTC3P53804 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.64■■□□□ 1.54
TTC3P53804 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
TTC3P53804 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
TTC3P53804 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
TTC3P53804 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
TTC3P53804 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
TTC3P53804 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.64■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms