Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 AC021242.3-201ENST00000607598 1377 ntBASIC20.17■□□□□ 0.82
SKA3Q8IX90 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.17■□□□□ 0.82
SKA3Q8IX90 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SKA3Q8IX90 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA3Q8IX90 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 Z92544.1-202ENST00000571933 1220 ntBASIC20.16■□□□□ 0.82
SKA3Q8IX90 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA3Q8IX90 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA3Q8IX90 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SKA3Q8IX90 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SKA3Q8IX90 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.16■□□□□ 0.82
SKA3Q8IX90 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.15■□□□□ 0.82
SKA3Q8IX90 AC239859.2-201ENST00000444165 318 ntBASIC20.15■□□□□ 0.82
SKA3Q8IX90 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.15■□□□□ 0.82
SKA3Q8IX90 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SKA3Q8IX90 AL161729.1-201ENST00000604104 1402 ntBASIC20.15■□□□□ 0.82
SKA3Q8IX90 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.15■□□□□ 0.82
SKA3Q8IX90 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.15■□□□□ 0.82
SKA3Q8IX90 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SKA3Q8IX90 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SKA3Q8IX90 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA3Q8IX90 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.14■□□□□ 0.81
SKA3Q8IX90 AL035685.1-201ENST00000636663 812 ntBASIC20.14■□□□□ 0.81
SKA3Q8IX90 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA3Q8IX90 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SKA3Q8IX90 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.13■□□□□ 0.81
SKA3Q8IX90 AC133561.1-201ENST00000568600 2415 ntBASIC20.13■□□□□ 0.81
SKA3Q8IX90 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA3Q8IX90 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.13■□□□□ 0.81
SKA3Q8IX90 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.13■□□□□ 0.81
SKA3Q8IX90 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.13■□□□□ 0.81
SKA3Q8IX90 KRT125P-201ENST00000546827 989 ntBASIC20.13■□□□□ 0.81
SKA3Q8IX90 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA3Q8IX90 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SKA3Q8IX90 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SKA3Q8IX90 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA3Q8IX90 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.12■□□□□ 0.81
SKA3Q8IX90 AC004448.1-201ENST00000458332 883 ntBASIC20.12■□□□□ 0.81
SKA3Q8IX90 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
SKA3Q8IX90 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SKA3Q8IX90 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA3Q8IX90 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA3Q8IX90 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
SKA3Q8IX90 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SKA3Q8IX90 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SKA3Q8IX90 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA3Q8IX90 MIR4787-201ENST00000607364 84 ntBASIC20.11■□□□□ 0.81
SKA3Q8IX90 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SKA3Q8IX90 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 SNX5-217ENST00000606557 1087 ntBASIC20.1■□□□□ 0.81
SKA3Q8IX90 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.1■□□□□ 0.81
SKA3Q8IX90 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA3Q8IX90 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SKA3Q8IX90 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA3Q8IX90 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.09■□□□□ 0.81
SKA3Q8IX90 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.09■□□□□ 0.81
SKA3Q8IX90 ABCB10P4-201ENST00000566803 2184 ntBASIC20.09■□□□□ 0.81
SKA3Q8IX90 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SKA3Q8IX90 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms