Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.69■■□□□ 1.86
HMGCS2P54868 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
HMGCS2P54868 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
HMGCS2P54868 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.68■■□□□ 1.86
HMGCS2P54868 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.68■■□□□ 1.86
HMGCS2P54868 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.68■■□□□ 1.86
HMGCS2P54868 AC027682.1-201ENST00000562846 899 ntBASIC26.68■■□□□ 1.86
HMGCS2P54868 AC008764.7-201ENST00000593779 1081 ntBASIC26.68■■□□□ 1.86
HMGCS2P54868 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 C17orf82-201ENST00000623772 1530 ntBASIC26.68■■□□□ 1.86
HMGCS2P54868 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGCS2P54868 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
HMGCS2P54868 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
HMGCS2P54868 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.67■■□□□ 1.86
HMGCS2P54868 AL138724.1-201ENST00000606771 1088 ntBASIC26.67■■□□□ 1.86
HMGCS2P54868 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC26.67■■□□□ 1.86
HMGCS2P54868 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC26.67■■□□□ 1.86
HMGCS2P54868 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGCS2P54868 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGCS2P54868 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGCS2P54868 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.66■■□□□ 1.86
HMGCS2P54868 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.66■■□□□ 1.86
HMGCS2P54868 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.66■■□□□ 1.86
HMGCS2P54868 MIR6821-201ENST00000617625 74 ntBASIC26.66■■□□□ 1.86
HMGCS2P54868 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.66■■□□□ 1.86
HMGCS2P54868 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
HMGCS2P54868 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
HMGCS2P54868 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
HMGCS2P54868 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
HMGCS2P54868 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.65■■□□□ 1.86
HMGCS2P54868 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGCS2P54868 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGCS2P54868 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGCS2P54868 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGCS2P54868 AC006455.2-201ENST00000429931 906 ntBASIC26.64■■□□□ 1.86
HMGCS2P54868 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC26.64■■□□□ 1.86
HMGCS2P54868 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.64■■□□□ 1.86
HMGCS2P54868 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGCS2P54868 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.63■■□□□ 1.85
HMGCS2P54868 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
HMGCS2P54868 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
HMGCS2P54868 AC099791.1-201ENST00000416440 715 ntBASIC26.63■■□□□ 1.85
HMGCS2P54868 AC097381.1-201ENST00000429019 1296 ntBASIC26.63■■□□□ 1.85
HMGCS2P54868 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.63■■□□□ 1.85
HMGCS2P54868 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC26.63■■□□□ 1.85
HMGCS2P54868 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
HMGCS2P54868 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
HMGCS2P54868 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
HMGCS2P54868 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
HMGCS2P54868 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.63■■□□□ 1.85
HMGCS2P54868 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
HMGCS2P54868 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.62■■□□□ 1.85
HMGCS2P54868 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGCS2P54868 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.62■■□□□ 1.85
HMGCS2P54868 AC087623.3-201ENST00000607047 1098 ntBASIC26.62■■□□□ 1.85
HMGCS2P54868 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
HMGCS2P54868 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGCS2P54868 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
HMGCS2P54868 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HMGCS2P54868 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
HMGCS2P54868 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC26.61■■□□□ 1.85
HMGCS2P54868 AC241377.3-202ENST00000626088 1088 ntBASIC26.61■■□□□ 1.85
HMGCS2P54868 AC241585.3-202ENST00000628937 1088 ntBASIC26.61■■□□□ 1.85
HMGCS2P54868 AC245100.8-202ENST00000629247 1058 ntBASIC26.61■■□□□ 1.85
HMGCS2P54868 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
HMGCS2P54868 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
HMGCS2P54868 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
HMGCS2P54868 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.6■■□□□ 1.85
HMGCS2P54868 AC091060.1-201ENST00000623524 1766 ntBASIC26.6■■□□□ 1.85
HMGCS2P54868 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGCS2P54868 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.59■■□□□ 1.85
HMGCS2P54868 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGCS2P54868 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGCS2P54868 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGCS2P54868 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.59■■□□□ 1.85
HMGCS2P54868 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.59■■□□□ 1.85
HMGCS2P54868 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.59■■□□□ 1.85
HMGCS2P54868 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC26.59■■□□□ 1.85
HMGCS2P54868 AC136469.2-201ENST00000623944 1028 ntBASIC26.59■■□□□ 1.85
HMGCS2P54868 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
HMGCS2P54868 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGCS2P54868 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.58■■□□□ 1.85
HMGCS2P54868 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
HMGCS2P54868 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms