Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.85■■□□□ 1.41
COL9A1P20849 AC245100.8-202ENST00000629247 1058 ntBASIC23.85■■□□□ 1.41
COL9A1P20849 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL9A1P20849 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL9A1P20849 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL9A1P20849 AF131216.4-201ENST00000638924 1588 ntBASIC23.84■■□□□ 1.41
COL9A1P20849 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL9A1P20849 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL9A1P20849 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL9A1P20849 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.84■■□□□ 1.41
COL9A1P20849 AC026185.1-201ENST00000445748 174 ntBASIC23.84■■□□□ 1.41
COL9A1P20849 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.84■■□□□ 1.41
COL9A1P20849 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.84■■□□□ 1.41
COL9A1P20849 FOXO3B-201ENST00000395675 1928 ntBASIC23.84■■□□□ 1.41
COL9A1P20849 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.84■■□□□ 1.41
COL9A1P20849 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.83■■□□□ 1.41
COL9A1P20849 SERBP1P1-201ENST00000396021 1160 ntBASIC23.83■■□□□ 1.41
COL9A1P20849 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.83■■□□□ 1.41
COL9A1P20849 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL9A1P20849 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL9A1P20849 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.83■■□□□ 1.41
COL9A1P20849 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL9A1P20849 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL9A1P20849 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL9A1P20849 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL9A1P20849 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL9A1P20849 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.82■■□□□ 1.4
COL9A1P20849 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.82■■□□□ 1.4
COL9A1P20849 MIR6722-201ENST00000617286 78 ntBASIC23.82■■□□□ 1.4
COL9A1P20849 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.82■■□□□ 1.4
COL9A1P20849 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL9A1P20849 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.82■■□□□ 1.4
COL9A1P20849 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL9A1P20849 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.82■■□□□ 1.4
COL9A1P20849 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.81■■□□□ 1.4
COL9A1P20849 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
COL9A1P20849 CDCA4P2-201ENST00000441182 718 ntBASIC23.81■■□□□ 1.4
COL9A1P20849 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.81■■□□□ 1.4
COL9A1P20849 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.81■■□□□ 1.4
COL9A1P20849 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.81■■□□□ 1.4
COL9A1P20849 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
COL9A1P20849 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.8■■□□□ 1.4
COL9A1P20849 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL9A1P20849 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.79■■□□□ 1.4
COL9A1P20849 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.79■■□□□ 1.4
COL9A1P20849 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.79■■□□□ 1.4
COL9A1P20849 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.79■■□□□ 1.4
COL9A1P20849 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
COL9A1P20849 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.79■■□□□ 1.4
COL9A1P20849 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL9A1P20849 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 AC123595.1-201ENST00000440769 1046 ntBASIC23.78■■□□□ 1.4
COL9A1P20849 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.78■■□□□ 1.4
COL9A1P20849 AC073111.5-205ENST00000641717 521 ntBASIC23.78■■□□□ 1.4
COL9A1P20849 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 ERN1-208ENST00000606895 2068 ntBASIC23.78■■□□□ 1.4
COL9A1P20849 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL9A1P20849 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL9A1P20849 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.77■■□□□ 1.4
COL9A1P20849 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.77■■□□□ 1.4
COL9A1P20849 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.77■■□□□ 1.4
COL9A1P20849 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL9A1P20849 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.77■■□□□ 1.4
COL9A1P20849 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL9A1P20849 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 AC096887.2-201ENST00000623443 1957 ntBASIC23.76■■□□□ 1.39
COL9A1P20849 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.76■■□□□ 1.39
COL9A1P20849 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL9A1P20849 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL9A1P20849 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL9A1P20849 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.75■■□□□ 1.39
COL9A1P20849 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.75■■□□□ 1.39
COL9A1P20849 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL9A1P20849 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.75■■□□□ 1.39
COL9A1P20849 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.75■■□□□ 1.39
COL9A1P20849 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL9A1P20849 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.75■■□□□ 1.39
COL9A1P20849 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.75■■□□□ 1.39
COL9A1P20849 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.74■■□□□ 1.39
COL9A1P20849 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.74■■□□□ 1.39
COL9A1P20849 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.74■■□□□ 1.39
COL9A1P20849 AC011298.3-201ENST00000615796 283 ntBASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms