Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SLC5A6-214ENST00000464538 664 ntTSL 418.37■□□□□ 0.534e-7■■■□□ 14.8
CDC40O60508 DDX42-212ENST00000581135 589 ntTSL 415.13■□□□□ 0.014e-7■■■□□ 14.8
CDC40O60508 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.044e-7■■■□□ 14.8
CDC40O60508 BCAR1-215ENST00000564028 558 ntTSL 414.75□□□□□ -0.054e-7■■■□□ 14.8
CDC40O60508 BCAR1-217ENST00000566465 547 ntTSL 414.19□□□□□ -0.144e-7■■■□□ 14.8
CDC40O60508 BCAR1-221ENST00000569006 574 ntTSL 413.69□□□□□ -0.224e-7■■■□□ 14.8
CDC40O60508 IGF1R-210ENST00000559925 2280 ntTSL 1 (best)13.3□□□□□ -0.284e-7■■■□□ 14.8
CDC40O60508 BCAR1-214ENST00000563700 576 ntTSL 413.26□□□□□ -0.294e-7■■■□□ 14.8
CDC40O60508 BCAR1-219ENST00000567215 581 ntTSL 412.79□□□□□ -0.364e-7■■■□□ 14.8
CDC40O60508 SLC5A6-217ENST00000488743 3174 ntTSL 210.53□□□□□ -0.724e-7■■■□□ 14.8
CDC40O60508 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.734e-7■■■□□ 14.8
CDC40O60508 IGF1R-201ENST00000268035 11803 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.754e-7■■■□□ 14.8
CDC40O60508 IGF1R-204ENST00000558355 572 ntTSL 210.35□□□□□ -0.754e-7■■■□□ 14.8
CDC40O60508 IGF1R-203ENST00000557938 574 ntTSL 49.18□□□□□ -0.944e-7■■■□□ 14.8
CDC40O60508 LPCAT1-205ENST00000513757 547 ntTSL 49.12□□□□□ -0.953e-6■■■□□ 14.8
CDC40O60508 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC8.45□□□□□ -1.064e-7■■■□□ 14.8
CDC40O60508 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.782e-8■■■□□ 14.8
CDC40O60508 HNRNPM-204ENST00000594907 1078 ntTSL 517.77■□□□□ 0.442e-8■■■□□ 14.8
CDC40O60508 HNRNPM-213ENST00000600092 1086 ntTSL 217.15■□□□□ 0.342e-8■■■□□ 14.8
CDC40O60508 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.272e-8■■■□□ 14.8
CDC40O60508 HNRNPM-214ENST00000600806 2373 ntTSL 516.62■□□□□ 0.252e-8■■■□□ 14.8
CDC40O60508 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.132e-8■■■□□ 14.8
CDC40O60508 NUP210-202ENST00000420141 3134 ntTSL 1 (best)20.65■□□□□ 0.98e-15■■■□□ 14.7
CDC40O60508 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.188e-15■■■□□ 14.7
CDC40O60508 FLNA-216ENST00000490936 5374 ntTSL 1 (best)15.18■□□□□ 0.024e-7■■■□□ 14.7
CDC40O60508 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.391e-6■■■□□ 14.6
CDC40O60508 NEU4-211ENST00000435855 2281 ntTSL 219.5■□□□□ 0.712e-6■■■□□ 14.6
CDC40O60508 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.712e-6■■■□□ 14.6
CDC40O60508 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.462e-6■■■□□ 14.6
CDC40O60508 NEU4-217ENST00000618597 3013 ntTSL 217.35■□□□□ 0.372e-6■■■□□ 14.6
CDC40O60508 NEU4-206ENST00000415936 860 ntTSL 316.69■□□□□ 0.262e-6■■■□□ 14.6
CDC40O60508 NEU4-208ENST00000423583 753 ntTSL 516.19■□□□□ 0.182e-6■■■□□ 14.6
CDC40O60508 EEF1D-240ENST00000531770 589 ntTSL 413.08□□□□□ -0.327e-11■■■□□ 14.6
CDC40O60508 BAG6-250ENST00000451898 993 ntTSL 317.37■□□□□ 0.376e-14■■□□□ 14.5
CDC40O60508 BAG6-248ENST00000441054 654 ntTSL 316.14■□□□□ 0.176e-14■■□□□ 14.5
CDC40O60508 BAG6-240ENST00000424480 1056 ntTSL 215.52■□□□□ 0.086e-14■■□□□ 14.5
CDC40O60508 BAG6-245ENST00000437771 2407 ntTSL 514.06□□□□□ -0.166e-14■■□□□ 14.5
CDC40O60508 BAG6-244ENST00000435080 1710 ntTSL 513.29□□□□□ -0.286e-14■■□□□ 14.5
CDC40O60508 BAG6-255ENST00000456622 859 ntTSL 511.36□□□□□ -0.596e-14■■□□□ 14.5
CDC40O60508 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC11.28□□□□□ -0.66e-14■■□□□ 14.5
CDC40O60508 BAG6-239ENST00000424176 747 ntTSL 311.13□□□□□ -0.636e-14■■□□□ 14.5
CDC40O60508 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC10.97□□□□□ -0.656e-14■■□□□ 14.5
CDC40O60508 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.676e-14■■□□□ 14.5
CDC40O60508 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.736e-14■■□□□ 14.5
CDC40O60508 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.746e-14■■□□□ 14.5
CDC40O60508 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.771e-6■■□□□ 14.4
CDC40O60508 GPI-208ENST00000588991 2021 ntTSL 218.72■□□□□ 0.591e-6■■□□□ 14.4
CDC40O60508 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.99□□□□□ -0.171e-6■■□□□ 14.4
CDC40O60508 GPI-202ENST00000415930 4000 ntTSL 2 BASIC7.4□□□□□ -1.221e-6■■□□□ 14.4
CDC40O60508 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.512e-6■■□□□ 14.4
CDC40O60508 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.87■□□□□ 0.452e-6■■□□□ 14.4
CDC40O60508 NEU4-207ENST00000420288 845 ntTSL 317.8■□□□□ 0.442e-6■■□□□ 14.4
CDC40O60508 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.41■□□□□ 0.382e-6■■□□□ 14.4
CDC40O60508 NEU4-209ENST00000426032 676 ntTSL 315.37■□□□□ 0.052e-6■■□□□ 14.4
CDC40O60508 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.49■□□□□ 0.076e-21■■□□□ 14.4
CDC40O60508 MAT2A-205ENST00000481412 1438 ntTSL 1 (best)11.8□□□□□ -0.526e-21■■□□□ 14.4
CDC40O60508 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.151e-7■■□□□ 14.3
CDC40O60508 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.928e-7■■□□□ 14.2
CDC40O60508 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.22■■□□□ 1.318e-7■■□□□ 14.2
CDC40O60508 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.77■■□□□ 1.086e-10■■□□□ 14.2
CDC40O60508 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.77■■□□□ 1.086e-10■■□□□ 14.2
CDC40O60508 NECAB3-207ENST00000478237 827 ntTSL 220.74■□□□□ 0.918e-13■■□□□ 14.2
CDC40O60508 NECAB3-212ENST00000485976 1016 ntTSL 520.74■□□□□ 0.918e-13■■□□□ 14.2
CDC40O60508 PTPRF-207ENST00000436724 2168 ntTSL 1 (best)19.22■□□□□ 0.678e-7■■□□□ 14.2
CDC40O60508 NECAB3-209ENST00000483813 1277 ntTSL 518.62■□□□□ 0.578e-13■■□□□ 14.2
CDC40O60508 PFKL-207ENST00000474114 6007 ntTSL 1 (best)18.4■□□□□ 0.548e-7■■□□□ 14.2
CDC40O60508 NECAB3-215ENST00000494174 859 ntTSL 517.97■□□□□ 0.478e-13■■□□□ 14.2
CDC40O60508 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.468e-7■■□□□ 14.2
CDC40O60508 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.396e-10■■□□□ 14.2
CDC40O60508 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.99■□□□□ 0.316e-10■■□□□ 14.2
CDC40O60508 NECAB3-218ENST00000606525 2010 ntTSL 216.9■□□□□ 0.38e-13■■□□□ 14.2
CDC40O60508 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.248e-7■■□□□ 14.2
CDC40O60508 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.158e-7■■□□□ 14.2
CDC40O60508 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.148e-7■■□□□ 14.2
CDC40O60508 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.128e-7■■□□□ 14.2
CDC40O60508 FOXP4-206ENST00000451305 367 ntTSL 1 (best)15.76■□□□□ 0.116e-10■■□□□ 14.2
CDC40O60508 RAN-205ENST00000477395 762 ntTSL 515.65■□□□□ 0.18e-7■■□□□ 14.2
CDC40O60508 NECAB3-208ENST00000480994 732 ntTSL 515.52■□□□□ 0.088e-13■■□□□ 14.2
CDC40O60508 NECAB3-204ENST00000463246 766 ntTSL 315.34■□□□□ 0.058e-13■■□□□ 14.2
CDC40O60508 TMEM37-204ENST00000465296 820 ntTSL 315.32■□□□□ 0.048e-7■■□□□ 14.2
CDC40O60508 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.048e-7■■□□□ 14.2
CDC40O60508 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.19■□□□□ 0.028e-7■■□□□ 14.2
CDC40O60508 AL365205.1-201ENST00000456057 3947 ntTSL 215.02□□□□□ -0.018e-7■■□□□ 14.2
CDC40O60508 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.93□□□□□ -0.028e-7■■□□□ 14.2
CDC40O60508 TMEM37-203ENST00000417645 522 ntTSL 313.83□□□□□ -0.28e-7■■□□□ 14.2
CDC40O60508 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.27□□□□□ -0.298e-7■■□□□ 14.2
CDC40O60508 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC12.69□□□□□ -0.388e-7■■□□□ 14.2
CDC40O60508 PTPRF-202ENST00000372405 1962 ntTSL 1 (best)12.52□□□□□ -0.48e-7■■□□□ 14.2
CDC40O60508 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC12.26□□□□□ -0.458e-7■■□□□ 14.2
CDC40O60508 NECAB3-206ENST00000477778 462 ntTSL 311.15□□□□□ -0.628e-13■■□□□ 14.2
CDC40O60508 PTPRF-208ENST00000437607 788 ntTSL 1 (best)11.09□□□□□ -0.638e-7■■□□□ 14.2
CDC40O60508 FOXP4-201ENST00000307972 3745 ntTSL 1 (best) BASIC10.69□□□□□ -0.76e-10■■□□□ 14.2
CDC40O60508 G6PC-202ENST00000585489 1097 ntTSL 5 BASIC10.04□□□□□ -0.88e-7■■□□□ 14.2
CDC40O60508 RAN-208ENST00000537745 1065 ntTSL 1 (best)9.93□□□□□ -0.828e-7■■□□□ 14.2
CDC40O60508 RAN-207ENST00000536606 572 ntTSL 39.41□□□□□ -0.98e-7■■□□□ 14.2
CDC40O60508 EPB41L5-204ENST00000443902 3167 ntTSL 2 BASIC8.92□□□□□ -0.988e-7■■□□□ 14.2
CDC40O60508 G6PC-204ENST00000592383 987 ntTSL 2 BASIC8.54□□□□□ -1.048e-7■■□□□ 14.2
CDC40O60508 RAN-204ENST00000464211 562 ntTSL 58.54□□□□□ -1.048e-7■■□□□ 14.2
CDC40O60508 RAN-211ENST00000541679 572 ntTSL 5 BASIC7.97□□□□□ -1.138e-7■■□□□ 14.2
CDC40O60508 RAN-201ENST00000392367 780 ntTSL 5 BASIC7.87□□□□□ -1.158e-7■■□□□ 14.2
Retrieved 100 of 5,364 protein–RNA pairs in 132.5 ms