Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTFDC1Q9BY42 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 AL138724.1-201ENST00000606771 1088 ntBASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 AC087623.3-201ENST00000607047 1098 ntBASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 AC011298.3-201ENST00000615796 283 ntBASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
RTFDC1Q9BY42 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 AC027682.1-201ENST00000562846 899 ntBASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.3■■■□□ 2.12
RTFDC1Q9BY42 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
RTFDC1Q9BY42 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 AC099791.2-201ENST00000605725 427 ntBASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTFDC1Q9BY42 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 AC092803.2-201ENST00000564287 1899 ntBASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 AL162430.1-201ENST00000480705 870 ntBASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTFDC1Q9BY42 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.26■■■□□ 2.12
RTFDC1Q9BY42 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.26■■■□□ 2.12
RTFDC1Q9BY42 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.12
RTFDC1Q9BY42 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.26■■■□□ 2.11
RTFDC1Q9BY42 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
RTFDC1Q9BY42 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RTFDC1Q9BY42 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.25■■■□□ 2.11
RTFDC1Q9BY42 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.25■■■□□ 2.11
RTFDC1Q9BY42 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RTFDC1Q9BY42 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RTFDC1Q9BY42 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 AC009102.2-201ENST00000606772 1639 ntBASIC28.24■■■□□ 2.11
RTFDC1Q9BY42 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTFDC1Q9BY42 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC28.23■■■□□ 2.11
RTFDC1Q9BY42 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTFDC1Q9BY42 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RTFDC1Q9BY42 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.22■■■□□ 2.11
RTFDC1Q9BY42 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.22■■■□□ 2.11
RTFDC1Q9BY42 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.22■■■□□ 2.11
RTFDC1Q9BY42 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.22■■■□□ 2.11
RTFDC1Q9BY42 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 IRS3P-201ENST00000223076 1006 ntBASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 STK32C-205ENST00000456004 607 ntTSL 2 BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.21■■■□□ 2.11
RTFDC1Q9BY42 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RTFDC1Q9BY42 AC008764.7-201ENST00000593779 1081 ntBASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
RTFDC1Q9BY42 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 AC099791.1-201ENST00000416440 715 ntBASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms