Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CX3CL1P78423 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.45■□□□□ 0.54
CX3CL1P78423 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CX3CL1P78423 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CX3CL1P78423 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.45■□□□□ 0.54
CX3CL1P78423 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.45■□□□□ 0.54
CX3CL1P78423 LINC01124-201ENST00000409786 2117 ntBASIC18.44■□□□□ 0.54
CX3CL1P78423 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CX3CL1P78423 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.44■□□□□ 0.54
CX3CL1P78423 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.44■□□□□ 0.54
CX3CL1P78423 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.44■□□□□ 0.54
CX3CL1P78423 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.44■□□□□ 0.54
CX3CL1P78423 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.43■□□□□ 0.54
CX3CL1P78423 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CL1P78423 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CL1P78423 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CL1P78423 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CX3CL1P78423 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.42■□□□□ 0.54
CX3CL1P78423 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 AC103724.3-201ENST00000564481 992 ntBASIC18.42■□□□□ 0.54
CX3CL1P78423 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.42■□□□□ 0.54
CX3CL1P78423 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.42■□□□□ 0.54
CX3CL1P78423 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CX3CL1P78423 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CL1P78423 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CX3CL1P78423 AC079834.2-201ENST00000609776 1949 ntBASIC18.41■□□□□ 0.54
CX3CL1P78423 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.41■□□□□ 0.54
CX3CL1P78423 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.41■□□□□ 0.54
CX3CL1P78423 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CX3CL1P78423 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CL1P78423 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CX3CL1P78423 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.4■□□□□ 0.54
CX3CL1P78423 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CL1P78423 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CL1P78423 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.4■□□□□ 0.54
CX3CL1P78423 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CL1P78423 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.4■□□□□ 0.54
CX3CL1P78423 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.4■□□□□ 0.54
CX3CL1P78423 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CL1P78423 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.4■□□□□ 0.54
CX3CL1P78423 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CX3CL1P78423 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.39■□□□□ 0.53
CX3CL1P78423 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 AC068473.5-201ENST00000616428 2072 ntBASIC18.39■□□□□ 0.53
CX3CL1P78423 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CX3CL1P78423 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CL1P78423 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CL1P78423 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CX3CL1P78423 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CL1P78423 MIR4281-201ENST00000580852 62 ntBASIC18.38■□□□□ 0.53
CX3CL1P78423 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CL1P78423 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CL1P78423 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CL1P78423 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
CX3CL1P78423 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 RARRES2P1-201ENST00000474487 481 ntBASIC18.37■□□□□ 0.53
CX3CL1P78423 AL031848.2-201ENST00000607670 837 ntBASIC18.37■□□□□ 0.53
CX3CL1P78423 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CX3CL1P78423 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CL1P78423 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CL1P78423 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CX3CL1P78423 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
CX3CL1P78423 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CL1P78423 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CL1P78423 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CL1P78423 AC141586.4-201ENST00000624558 1573 ntBASIC18.36■□□□□ 0.53
CX3CL1P78423 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.36■□□□□ 0.53
CX3CL1P78423 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CL1P78423 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms