Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.87■□□□□ 0.77
ABCA4P78363 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ABCA4P78363 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
ABCA4P78363 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
ABCA4P78363 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ABCA4P78363 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ABCA4P78363 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ABCA4P78363 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
ABCA4P78363 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ABCA4P78363 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ABCA4P78363 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.86■□□□□ 0.77
ABCA4P78363 AC090192.1-201ENST00000517740 490 ntBASIC19.85■□□□□ 0.77
ABCA4P78363 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ABCA4P78363 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.85■□□□□ 0.77
ABCA4P78363 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ABCA4P78363 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.85■□□□□ 0.77
ABCA4P78363 AC091305.1-201ENST00000479476 895 ntBASIC19.85■□□□□ 0.77
ABCA4P78363 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ABCA4P78363 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.84■□□□□ 0.77
ABCA4P78363 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ABCA4P78363 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ABCA4P78363 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 AC092803.2-201ENST00000564287 1899 ntBASIC19.84■□□□□ 0.77
ABCA4P78363 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.84■□□□□ 0.77
ABCA4P78363 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
ABCA4P78363 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.84■□□□□ 0.77
ABCA4P78363 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 AC009102.2-201ENST00000606772 1639 ntBASIC19.84■□□□□ 0.77
ABCA4P78363 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ABCA4P78363 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.83■□□□□ 0.77
ABCA4P78363 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.83■□□□□ 0.77
ABCA4P78363 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ABCA4P78363 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ABCA4P78363 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.83■□□□□ 0.76
ABCA4P78363 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ABCA4P78363 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ABCA4P78363 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.83■□□□□ 0.76
ABCA4P78363 AC034268.1-201ENST00000441047 882 ntBASIC19.83■□□□□ 0.76
ABCA4P78363 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ABCA4P78363 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
ABCA4P78363 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ABCA4P78363 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.82■□□□□ 0.76
ABCA4P78363 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
ABCA4P78363 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.82■□□□□ 0.76
ABCA4P78363 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.82■□□□□ 0.76
ABCA4P78363 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 AC131274.2-201ENST00000580697 1507 ntBASIC19.82■□□□□ 0.76
ABCA4P78363 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ABCA4P78363 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
ABCA4P78363 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ABCA4P78363 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.81■□□□□ 0.76
ABCA4P78363 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.81■□□□□ 0.76
ABCA4P78363 AC011298.3-201ENST00000615796 283 ntBASIC19.81■□□□□ 0.76
ABCA4P78363 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ABCA4P78363 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
ABCA4P78363 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ABCA4P78363 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ABCA4P78363 C17orf82-201ENST00000623772 1530 ntBASIC19.81■□□□□ 0.76
ABCA4P78363 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.8■□□□□ 0.76
ABCA4P78363 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.8■□□□□ 0.76
ABCA4P78363 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ABCA4P78363 AL138724.1-201ENST00000606771 1088 ntBASIC19.8■□□□□ 0.76
ABCA4P78363 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ABCA4P78363 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.79■□□□□ 0.76
ABCA4P78363 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ABCA4P78363 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
ABCA4P78363 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ABCA4P78363 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ABCA4P78363 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
ABCA4P78363 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ABCA4P78363 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.78■□□□□ 0.76
ABCA4P78363 MIR4767-201ENST00000582827 78 ntBASIC19.78■□□□□ 0.76
ABCA4P78363 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ABCA4P78363 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ABCA4P78363 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ABCA4P78363 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.78■□□□□ 0.76
ABCA4P78363 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms