Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
XRCC3O43542 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
XRCC3O43542 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
XRCC3O43542 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
XRCC3O43542 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.68■□□□□ 0.74
XRCC3O43542 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
XRCC3O43542 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.68■□□□□ 0.74
XRCC3O43542 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.68■□□□□ 0.74
XRCC3O43542 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
XRCC3O43542 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
XRCC3O43542 LINC00526-201ENST00000581067 1875 ntBASIC19.68■□□□□ 0.74
XRCC3O43542 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
XRCC3O43542 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
XRCC3O43542 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.67■□□□□ 0.74
XRCC3O43542 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
XRCC3O43542 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
XRCC3O43542 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
XRCC3O43542 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
XRCC3O43542 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
XRCC3O43542 SMPD5-203ENST00000639008 1464 ntBASIC19.67■□□□□ 0.74
XRCC3O43542 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.66■□□□□ 0.74
XRCC3O43542 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 RNF166-209ENST00000567844 633 ntTSL 5 BASIC19.66■□□□□ 0.74
XRCC3O43542 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
XRCC3O43542 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
XRCC3O43542 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
XRCC3O43542 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.65■□□□□ 0.74
XRCC3O43542 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC3O43542 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC3O43542 AC127496.7-201ENST00000625110 1798 ntBASIC19.65■□□□□ 0.74
XRCC3O43542 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.65■□□□□ 0.74
XRCC3O43542 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC3O43542 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC3O43542 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.65■□□□□ 0.74
XRCC3O43542 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
XRCC3O43542 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.65■□□□□ 0.74
XRCC3O43542 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
XRCC3O43542 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
XRCC3O43542 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
XRCC3O43542 GUSBP5-202ENST00000510805 1989 ntBASIC19.64■□□□□ 0.74
XRCC3O43542 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.64■□□□□ 0.74
XRCC3O43542 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.64■□□□□ 0.73
XRCC3O43542 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC3O43542 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.73
XRCC3O43542 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC3O43542 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
XRCC3O43542 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC3O43542 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC3O43542 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
XRCC3O43542 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.63■□□□□ 0.73
XRCC3O43542 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.63■□□□□ 0.73
XRCC3O43542 CR559946.2-201ENST00000623684 991 ntBASIC19.63■□□□□ 0.73
XRCC3O43542 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.62■□□□□ 0.73
XRCC3O43542 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
XRCC3O43542 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.62■□□□□ 0.73
XRCC3O43542 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.61■□□□□ 0.73
XRCC3O43542 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
XRCC3O43542 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
XRCC3O43542 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 KRT18P10-201ENST00000388836 1287 ntBASIC19.61■□□□□ 0.73
XRCC3O43542 ECEL1P1-201ENST00000373592 1742 ntBASIC19.61■□□□□ 0.73
XRCC3O43542 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
XRCC3O43542 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
XRCC3O43542 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
XRCC3O43542 AC137767.1-201ENST00000602918 1920 ntBASIC19.61■□□□□ 0.73
XRCC3O43542 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
XRCC3O43542 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
XRCC3O43542 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
XRCC3O43542 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
XRCC3O43542 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.6■□□□□ 0.73
XRCC3O43542 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms