Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.63■■□□□ 1.85
PCDHA1Q9Y5I3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHA1Q9Y5I3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 AC004448.1-201ENST00000458332 883 ntBASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 MIR6724-1-201ENST00000616420 92 ntBASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 MIR6724-2-201ENST00000616483 92 ntBASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 MIR6724-4-201ENST00000617390 92 ntBASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 MIR6724-3-201ENST00000622482 92 ntBASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PCDHA1Q9Y5I3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 MIR6722-201ENST00000617286 78 ntBASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 HLA-L-211ENST00000482052 1765 ntBASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA1Q9Y5I3 AC131274.2-201ENST00000580697 1507 ntBASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA1Q9Y5I3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHA1Q9Y5I3 AP003733.4-201ENST00000623785 1697 ntBASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.58■■□□□ 1.85
PCDHA1Q9Y5I3 AC142381.3-201ENST00000568208 1670 ntBASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 AC138932.3-201ENST00000567634 1902 ntBASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA1Q9Y5I3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
PCDHA1Q9Y5I3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA1Q9Y5I3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA1Q9Y5I3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA1Q9Y5I3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 AL117332.1-201ENST00000622628 974 ntBASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHA1Q9Y5I3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 AL022069.1-201ENST00000568025 1636 ntBASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHA1Q9Y5I3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHA1Q9Y5I3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 MIR3621-201ENST00000580529 85 ntBASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA1Q9Y5I3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
PCDHA1Q9Y5I3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA1Q9Y5I3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms