Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.91■■□□□ 1.1
CPSF4O95639 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPSF4O95639 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPSF4O95639 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.9■■□□□ 1.1
CPSF4O95639 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPSF4O95639 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.9■■□□□ 1.1
CPSF4O95639 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPSF4O95639 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
CPSF4O95639 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CPSF4O95639 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CPSF4O95639 DUX4L9-201ENST00000449051 1259 ntBASIC21.89■■□□□ 1.09
CPSF4O95639 MIR6765-201ENST00000614092 87 ntBASIC21.89■■□□□ 1.09
CPSF4O95639 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CPSF4O95639 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.89■■□□□ 1.09
CPSF4O95639 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CPSF4O95639 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.89■■□□□ 1.09
CPSF4O95639 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.89■■□□□ 1.09
CPSF4O95639 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CPSF4O95639 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
CPSF4O95639 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.88■■□□□ 1.09
CPSF4O95639 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CPSF4O95639 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.88■■□□□ 1.09
CPSF4O95639 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.88■■□□□ 1.09
CPSF4O95639 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CPSF4O95639 AC133561.1-201ENST00000568600 2415 ntBASIC21.87■■□□□ 1.09
CPSF4O95639 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CPSF4O95639 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CPSF4O95639 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.87■■□□□ 1.09
CPSF4O95639 RARRES2P2-201ENST00000394842 485 ntBASIC21.87■■□□□ 1.09
CPSF4O95639 AC087393.1-201ENST00000582896 145 ntBASIC21.87■■□□□ 1.09
CPSF4O95639 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CPSF4O95639 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
CPSF4O95639 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.87■■□□□ 1.09
CPSF4O95639 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.86■■□□□ 1.09
CPSF4O95639 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CPSF4O95639 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CPSF4O95639 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.86■■□□□ 1.09
CPSF4O95639 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.86■■□□□ 1.09
CPSF4O95639 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CPSF4O95639 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.86■■□□□ 1.09
CPSF4O95639 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CPSF4O95639 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CPSF4O95639 AC090877.2-201ENST00000558441 1738 ntBASIC21.86■■□□□ 1.09
CPSF4O95639 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.86■■□□□ 1.09
CPSF4O95639 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CPSF4O95639 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CPSF4O95639 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CPSF4O95639 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 AL592295.1-201ENST00000400984 884 ntBASIC21.85■■□□□ 1.09
CPSF4O95639 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.85■■□□□ 1.09
CPSF4O95639 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.85■■□□□ 1.09
CPSF4O95639 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.85■■□□□ 1.09
CPSF4O95639 U85056.1-201ENST00000616429 682 ntBASIC21.85■■□□□ 1.09
CPSF4O95639 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPSF4O95639 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.84■■□□□ 1.09
CPSF4O95639 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CPSF4O95639 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CPSF4O95639 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.84■■□□□ 1.09
CPSF4O95639 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CPSF4O95639 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CPSF4O95639 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.84■■□□□ 1.09
CPSF4O95639 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
CPSF4O95639 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
CPSF4O95639 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CPSF4O95639 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.83■■□□□ 1.09
CPSF4O95639 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CPSF4O95639 DUSP8P5-201ENST00000422884 1815 ntBASIC21.83■■□□□ 1.09
CPSF4O95639 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CPSF4O95639 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
CPSF4O95639 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CPSF4O95639 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
CPSF4O95639 HSD17B1P1-201ENST00000590052 955 ntBASIC21.83■■□□□ 1.09
CPSF4O95639 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CPSF4O95639 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CPSF4O95639 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CPSF4O95639 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CPSF4O95639 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
CPSF4O95639 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4O95639 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
CPSF4O95639 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4O95639 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4O95639 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.82■■□□□ 1.08
CPSF4O95639 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms