Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 RARRES2P1-201ENST00000474487 481 ntBASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 AC103724.3-201ENST00000564481 992 ntBASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 AC138932.3-201ENST00000567634 1902 ntBASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX6-3A6NJ46 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NKX6-3A6NJ46 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX6-3A6NJ46 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX6-3A6NJ46 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 MIR4281-201ENST00000580852 62 ntBASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX6-3A6NJ46 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX6-3A6NJ46 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX6-3A6NJ46 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX6-3A6NJ46 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX6-3A6NJ46 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX6-3A6NJ46 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX6-3A6NJ46 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX6-3A6NJ46 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms