Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 AC145676.1-201ENST00000514988 2004 ntBASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 MIR3621-201ENST00000580529 85 ntBASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.94■□□□□ 0.62
TRAV40A0A0B4J280 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 AC019069.1-201ENST00000610008 1333 ntBASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRAV40A0A0B4J280 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 AL136116.3-201ENST00000402907 1138 ntBASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TRAV40A0A0B4J280 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 SLC6A10P-202ENST00000431994 2058 ntBASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV40A0A0B4J280 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.9■□□□□ 0.62
TRAV40A0A0B4J280 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TRAV40A0A0B4J280 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV40A0A0B4J280 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV40A0A0B4J280 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 MIR6722-201ENST00000617286 78 ntBASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TRAV40A0A0B4J280 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TRAV40A0A0B4J280 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms