Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.01■■■□□ 2.4
USP42Q9H9J4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC30.01■■■□□ 2.39
USP42Q9H9J4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30■■■□□ 2.39
USP42Q9H9J4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC29.99■■■□□ 2.39
USP42Q9H9J4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
USP42Q9H9J4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
USP42Q9H9J4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.99■■■□□ 2.39
USP42Q9H9J4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP42Q9H9J4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.98■■■□□ 2.39
USP42Q9H9J4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP42Q9H9J4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 PBX2P1-201ENST00000493219 1291 ntBASIC29.97■■■□□ 2.39
USP42Q9H9J4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.97■■■□□ 2.39
USP42Q9H9J4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.97■■■□□ 2.39
USP42Q9H9J4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.97■■■□□ 2.39
USP42Q9H9J4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC29.97■■■□□ 2.39
USP42Q9H9J4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP42Q9H9J4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC29.96■■■□□ 2.39
USP42Q9H9J4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP42Q9H9J4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP42Q9H9J4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP42Q9H9J4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.96■■■□□ 2.39
USP42Q9H9J4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP42Q9H9J4 AL031432.3-201ENST00000607698 485 ntBASIC29.96■■■□□ 2.39
USP42Q9H9J4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP42Q9H9J4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
USP42Q9H9J4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC29.95■■■□□ 2.38
USP42Q9H9J4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC29.95■■■□□ 2.38
USP42Q9H9J4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC29.94■■■□□ 2.38
USP42Q9H9J4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
USP42Q9H9J4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC29.94■■■□□ 2.38
USP42Q9H9J4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
USP42Q9H9J4 AC142381.2-201ENST00000566120 298 ntBASIC29.94■■■□□ 2.38
USP42Q9H9J4 SNX5-217ENST00000606557 1087 ntBASIC29.94■■■□□ 2.38
USP42Q9H9J4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
USP42Q9H9J4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
USP42Q9H9J4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.93■■■□□ 2.38
USP42Q9H9J4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.92■■■□□ 2.38
USP42Q9H9J4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
USP42Q9H9J4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP42Q9H9J4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP42Q9H9J4 AC026271.2-201ENST00000428091 497 ntBASIC29.92■■■□□ 2.38
USP42Q9H9J4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
USP42Q9H9J4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP42Q9H9J4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP42Q9H9J4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP42Q9H9J4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP42Q9H9J4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
USP42Q9H9J4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USP42Q9H9J4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USP42Q9H9J4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC29.9■■■□□ 2.38
USP42Q9H9J4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
USP42Q9H9J4 SUDS3P1-201ENST00000505831 966 ntBASIC29.9■■■□□ 2.38
USP42Q9H9J4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
USP42Q9H9J4 FOXO3B-201ENST00000395675 1928 ntBASIC29.89■■■□□ 2.38
USP42Q9H9J4 UNC93B3-201ENST00000308076 687 ntBASIC29.89■■■□□ 2.38
USP42Q9H9J4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USP42Q9H9J4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
USP42Q9H9J4 MIR6722-201ENST00000617286 78 ntBASIC29.89■■■□□ 2.38
USP42Q9H9J4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC29.89■■■□□ 2.38
USP42Q9H9J4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC29.89■■■□□ 2.37
USP42Q9H9J4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
USP42Q9H9J4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
USP42Q9H9J4 AC092666.2-201ENST00000613287 246 ntBASIC29.88■■■□□ 2.37
USP42Q9H9J4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC29.88■■■□□ 2.37
USP42Q9H9J4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC29.87■■■□□ 2.37
USP42Q9H9J4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP42Q9H9J4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.86■■■□□ 2.37
USP42Q9H9J4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP42Q9H9J4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.86■■■□□ 2.37
USP42Q9H9J4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC29.86■■■□□ 2.37
USP42Q9H9J4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC29.86■■■□□ 2.37
USP42Q9H9J4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP42Q9H9J4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP42Q9H9J4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
USP42Q9H9J4 AC091060.1-201ENST00000623524 1766 ntBASIC29.85■■■□□ 2.37
USP42Q9H9J4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.85■■■□□ 2.37
USP42Q9H9J4 AL136162.1-201ENST00000607711 1078 ntBASIC29.85■■■□□ 2.37
USP42Q9H9J4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC29.84■■■□□ 2.37
USP42Q9H9J4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
USP42Q9H9J4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms