Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
SMCHD1A6NHR9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.98■■□□□ 1.91
SMCHD1A6NHR9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
SMCHD1A6NHR9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SMCHD1A6NHR9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMCHD1A6NHR9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMCHD1A6NHR9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.96■■□□□ 1.91
SMCHD1A6NHR9 SNX5-217ENST00000606557 1087 ntBASIC26.96■■□□□ 1.91
SMCHD1A6NHR9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SMCHD1A6NHR9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SMCHD1A6NHR9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.95■■□□□ 1.91
SMCHD1A6NHR9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.95■■□□□ 1.91
SMCHD1A6NHR9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.95■■□□□ 1.91
SMCHD1A6NHR9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SMCHD1A6NHR9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.95■■□□□ 1.9
SMCHD1A6NHR9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.95■■□□□ 1.9
SMCHD1A6NHR9 MIR4466-201ENST00000606121 54 ntBASIC26.94■■□□□ 1.9
SMCHD1A6NHR9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.94■■□□□ 1.9
SMCHD1A6NHR9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.94■■□□□ 1.9
SMCHD1A6NHR9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 SLC6A10P-202ENST00000431994 2058 ntBASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SMCHD1A6NHR9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 MIR3621-201ENST00000580529 85 ntBASIC26.92■■□□□ 1.9
SMCHD1A6NHR9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.91■■□□□ 1.9
SMCHD1A6NHR9 AL117332.1-201ENST00000622628 974 ntBASIC26.91■■□□□ 1.9
SMCHD1A6NHR9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.91■■□□□ 1.9
SMCHD1A6NHR9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SMCHD1A6NHR9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 MIR6724-1-201ENST00000616420 92 ntBASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 MIR6724-2-201ENST00000616483 92 ntBASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 MIR6724-4-201ENST00000617390 92 ntBASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 MIR6724-3-201ENST00000622482 92 ntBASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.89■■□□□ 1.9
SMCHD1A6NHR9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 AL136116.3-201ENST00000402907 1138 ntBASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
SMCHD1A6NHR9 AC090877.2-201ENST00000558441 1738 ntBASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.88■■□□□ 1.89
SMCHD1A6NHR9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMCHD1A6NHR9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.87■■□□□ 1.89
SMCHD1A6NHR9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.87■■□□□ 1.89
SMCHD1A6NHR9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMCHD1A6NHR9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 AL512631.2-201ENST00000604634 923 ntBASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 AL139246.5-201ENST00000606645 996 ntBASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.86■■□□□ 1.89
SMCHD1A6NHR9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.85■■□□□ 1.89
SMCHD1A6NHR9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.84■■□□□ 1.89
SMCHD1A6NHR9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.84■■□□□ 1.89
SMCHD1A6NHR9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SMCHD1A6NHR9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.84■■□□□ 1.89
SMCHD1A6NHR9 AC010997.5-201ENST00000609182 354 ntBASIC26.84■■□□□ 1.89
SMCHD1A6NHR9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.83■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms