Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.06■□□□□ 0.64
TRAV40A0A0B4J280 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV40A0A0B4J280 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV40A0A0B4J280 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV40A0A0B4J280 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV40A0A0B4J280 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV40A0A0B4J280 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.05■□□□□ 0.64
TRAV40A0A0B4J280 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.05■□□□□ 0.64
TRAV40A0A0B4J280 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV40A0A0B4J280 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV40A0A0B4J280 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAV40A0A0B4J280 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV40A0A0B4J280 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV40A0A0B4J280 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 MIR6724-1-201ENST00000616420 92 ntBASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 MIR6724-2-201ENST00000616483 92 ntBASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 MIR6724-4-201ENST00000617390 92 ntBASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 MIR6724-3-201ENST00000622482 92 ntBASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV40A0A0B4J280 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV40A0A0B4J280 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 AL117332.1-201ENST00000622628 974 ntBASIC19■□□□□ 0.63
TRAV40A0A0B4J280 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19■□□□□ 0.63
TRAV40A0A0B4J280 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV40A0A0B4J280 DUSP8P4-201ENST00000399538 1761 ntBASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 AC131281.2-201ENST00000520478 145 ntBASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 AC135731.1-201ENST00000569415 2548 ntBASIC18.98■□□□□ 0.63
TRAV40A0A0B4J280 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAV40A0A0B4J280 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
TRAV40A0A0B4J280 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAV40A0A0B4J280 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.96■□□□□ 0.63
TRAV40A0A0B4J280 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
TRAV40A0A0B4J280 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAV40A0A0B4J280 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 AL356740.2-201ENST00000601559 647 ntBASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 SNX5-217ENST00000606557 1087 ntBASIC18.95■□□□□ 0.62
TRAV40A0A0B4J280 AC091060.1-201ENST00000623524 1766 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms