Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.193e-8■□□□□ 10.3
LIN28BQ6ZN17 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.143e-8■□□□□ 10.3
LIN28BQ6ZN17 DCAF15-202ENST00000585468 815 ntTSL 219.75■□□□□ 0.753e-8■□□□□ 10.3
LIN28BQ6ZN17 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.453e-8■□□□□ 10.3
LIN28BQ6ZN17 ETFB-203ENST00000593992 603 ntTSL 217.59■□□□□ 0.413e-8■□□□□ 10.3
LIN28BQ6ZN17 ETFB-205ENST00000596253 575 ntTSL 316.6■□□□□ 0.253e-8■□□□□ 10.3
LIN28BQ6ZN17 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.633e-8■□□□□ 10.3
LIN28BQ6ZN17 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC10.53□□□□□ -0.723e-8■□□□□ 10.3
LIN28BQ6ZN17 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.83e-8■□□□□ 10.3
LIN28BQ6ZN17 PLOD2-210ENST00000495700 761 ntTSL 25.86□□□□□ -1.472e-7■□□□□ 10.3
LIN28BQ6ZN17 PGK1-203ENST00000476531 960 ntTSL 212.12□□□□□ -0.472e-9■□□□□ 10.3
LIN28BQ6ZN17 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.318e-10■□□□□ 10.3
LIN28BQ6ZN17 IL6ST-213ENST00000523039 481 ntTSL 27.76□□□□□ -1.171e-7■□□□□ 10.3
LIN28BQ6ZN17 SF3B3-209ENST00000567635 630 ntTSL 57.84□□□□□ -1.155e-7■□□□□ 10.2
LIN28BQ6ZN17 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.22■□□□□ 0.831e-7■□□□□ 10.2
LIN28BQ6ZN17 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.25■□□□□ 0.191e-7■□□□□ 10.2
LIN28BQ6ZN17 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.1□□□□□ -0.151e-7■□□□□ 10.2
LIN28BQ6ZN17 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.662e-18■□□□□ 10.2
LIN28BQ6ZN17 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.49□□□□□ -0.092e-6■□□□□ 10.2
LIN28BQ6ZN17 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC14.14□□□□□ -0.156e-10■□□□□ 10.2
LIN28BQ6ZN17 PKM-206ENST00000562784 529 ntTSL 212.38□□□□□ -0.433e-10■□□□□ 10.2
LIN28BQ6ZN17 PKM-207ENST00000562997 582 ntTSL 411.66□□□□□ -0.546e-10■□□□□ 10.2
LIN28BQ6ZN17 RPL32-201ENST00000273223 567 ntTSL 3 BASIC10.72□□□□□ -0.692e-18■□□□□ 10.2
LIN28BQ6ZN17 PKM-210ENST00000564178 554 ntTSL 410.23□□□□□ -0.776e-10■□□□□ 10.2
LIN28BQ6ZN17 RPL32-204ENST00000429711 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.782e-18■□□□□ 10.2
LIN28BQ6ZN17 RPL32-203ENST00000396957 1749 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.782e-18■□□□□ 10.2
LIN28BQ6ZN17 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.052e-6■□□□□ 10.2
LIN28BQ6ZN17 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.182e-18■□□□□ 10.2
LIN28BQ6ZN17 RPL32-207ENST00000452606 631 ntTSL 27.48□□□□□ -1.212e-18■□□□□ 10.2
LIN28BQ6ZN17 RPL32-208ENST00000457131 555 ntTSL 26.53□□□□□ -1.362e-18■□□□□ 10.2
LIN28BQ6ZN17 PON2-212ENST00000490778 694 ntTSL 525.34■■□□□ 1.657e-9■□□□□ 10.2
LIN28BQ6ZN17 PON2-208ENST00000469926 645 ntTSL 324.14■■□□□ 1.457e-9■□□□□ 10.2
LIN28BQ6ZN17 PON2-214ENST00000493290 550 ntTSL 420.07■□□□□ 0.87e-9■□□□□ 10.2
LIN28BQ6ZN17 PON2-213ENST00000491069 566 ntTSL 219.39■□□□□ 0.697e-9■□□□□ 10.2
LIN28BQ6ZN17 PON2-216ENST00000632034 570 ntTSL 26.15□□□□□ -1.427e-9■□□□□ 10.2
LIN28BQ6ZN17 PON2-203ENST00000446142 1099 ntTSL 1 (best)3.77□□□□□ -1.817e-9■□□□□ 10.2
LIN28BQ6ZN17 TUFM-202ENST00000561644 294 ntTSL 222.18■■□□□ 1.142e-7■□□□□ 10.2
LIN28BQ6ZN17 IFNGR1-203ENST00000458076 753 ntTSL 318.26■□□□□ 0.517e-7■□□□□ 10.2
LIN28BQ6ZN17 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.267e-7■□□□□ 10.2
LIN28BQ6ZN17 HINT1-205ENST00000508488 703 ntTSL 2 BASIC15.48■□□□□ 0.072e-9■□□□□ 10.2
LIN28BQ6ZN17 HINT1-204ENST00000506908 681 ntTSL 2 BASIC14.29□□□□□ -0.122e-9■□□□□ 10.2
LIN28BQ6ZN17 HINT1-208ENST00000513012 583 ntTSL 4 BASIC13□□□□□ -0.332e-9■□□□□ 10.2
LIN28BQ6ZN17 HINT1-210ENST00000520028 82 ntTSL 33.98□□□□□ -1.772e-9■□□□□ 10.2
LIN28BQ6ZN17 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.651e-8■□□□□ 10.2
LIN28BQ6ZN17 APLP2-215ENST00000530493 1322 ntTSL 212.57□□□□□ -0.46e-9■□□□□ 10.2
LIN28BQ6ZN17 RBMX-206ENST00000561733 837 ntTSL 311.86□□□□□ -0.513e-7■□□□□ 10.2
LIN28BQ6ZN17 RBMX-205ENST00000496459 2041 ntTSL 26.72□□□□□ -1.333e-7■□□□□ 10.2
LIN28BQ6ZN17 RALBP1-202ENST00000383432 4224 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.641e-6■□□□□ 10.2
LIN28BQ6ZN17 RALBP1-201ENST00000019317 4368 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.751e-6■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.52■□□□□ 0.727e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.43■□□□□ 0.387e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.177e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-210ENST00000588413 747 ntTSL 214.92□□□□□ -0.027e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.047e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.057e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.36□□□□□ -0.117e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC14.34□□□□□ -0.117e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-207ENST00000587630 1191 ntTSL 314.22□□□□□ -0.137e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-206ENST00000587326 1839 ntTSL 1 (best)14.06□□□□□ -0.167e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-214ENST00000590235 1569 ntTSL 1 (best) BASIC14□□□□□ -0.177e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC12.97□□□□□ -0.337e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-203ENST00000446571 1580 ntTSL 2 BASIC12.73□□□□□ -0.377e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.427e-7■□□□□ 10.2
LIN28BQ6ZN17 TMUB2-208ENST00000587775 546 ntTSL 39.99□□□□□ -0.817e-7■□□□□ 10.2
LIN28BQ6ZN17 INSIG2-205ENST00000479999 532 ntTSL 22.95□□□□□ -1.943e-11■□□□□ 10.2
LIN28BQ6ZN17 FN1-221ENST00000480737 384 ntTSL 23.27□□□□□ -1.899e-67■□□□□ 10.2
LIN28BQ6ZN17 PRKCB-210ENST00000498739 569 ntTSL 418.63■□□□□ 0.573e-12■□□□□ 10.2
LIN28BQ6ZN17 PRKCB-207ENST00000486868 467 ntTSL 312.04□□□□□ -0.483e-12■□□□□ 10.2
LIN28BQ6ZN17 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.029e-10■□□□□ 10.2
LIN28BQ6ZN17 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.5■□□□□ 0.399e-10■□□□□ 10.2
LIN28BQ6ZN17 RHOA-205ENST00000445425 633 ntTSL 317.36■□□□□ 0.379e-10■□□□□ 10.2
LIN28BQ6ZN17 RHOA-203ENST00000422781 961 ntTSL 2 BASIC11.67□□□□□ -0.549e-10■□□□□ 10.2
LIN28BQ6ZN17 AMBP-202ENST00000466610 579 ntTSL 312.2□□□□□ -0.462e-19■□□□□ 10.2
LIN28BQ6ZN17 CAT-205ENST00000534710 1020 ntTSL 1 (best)12.39□□□□□ -0.435e-7■□□□□ 10.2
LIN28BQ6ZN17 HLA-F-227ENST00000485513 778 nt29.45■■■□□ 2.311e-6■□□□□ 10.1
LIN28BQ6ZN17 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.04■□□□□ 0.83e-9■□□□□ 10.1
LIN28BQ6ZN17 PLXND1-204ENST00000504524 1701 ntTSL 1 (best)19.25■□□□□ 0.673e-9■□□□□ 10.1
LIN28BQ6ZN17 PLXND1-202ENST00000501038 1633 ntTSL 1 (best)19.1■□□□□ 0.653e-9■□□□□ 10.1
LIN28BQ6ZN17 ERO1A-207ENST00000556223 567 ntTSL 418.42■□□□□ 0.543e-9■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-204ENST00000434865 1163 ntTSL 217.38■□□□□ 0.371e-6■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-205ENST00000440610 1008 ntTSL 217.12■□□□□ 0.331e-6■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-207ENST00000449221 1061 ntTSL 217.12■□□□□ 0.331e-6■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-206ENST00000446780 1400 ntTSL 217.05■□□□□ 0.321e-6■□□□□ 10.1
LIN28BQ6ZN17 PLXND1-214ENST00000512744 2662 ntTSL 1 (best)16.09■□□□□ 0.173e-9■□□□□ 10.1
LIN28BQ6ZN17 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.143e-9■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.141e-6■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.181e-6■□□□□ 10.1
LIN28BQ6ZN17 LMAN2L-203ENST00000434524 2410 ntTSL 513.53□□□□□ -0.241e-6■□□□□ 10.1
LIN28BQ6ZN17 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.282e-8■□□□□ 10.1
LIN28BQ6ZN17 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC11.89□□□□□ -0.511e-6■□□□□ 10.1
LIN28BQ6ZN17 IGSF1-201ENST00000361420 4378 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.822e-8■□□□□ 10.1
LIN28BQ6ZN17 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC8.82□□□□□ -12e-8■□□□□ 10.1
LIN28BQ6ZN17 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.12e-8■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-201ENST00000318787 1350 ntTSL 1 (best)18.16■□□□□ 0.52e-7■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.36■□□□□ 0.212e-7■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-206ENST00000608461 587 ntTSL 215.91■□□□□ 0.142e-7■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.142e-7■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-209ENST00000609477 564 ntTSL 415.91■□□□□ 0.142e-7■□□□□ 10.1
LIN28BQ6ZN17 ATP5O-209ENST00000495005 586 ntTSL 211.82□□□□□ -0.523e-8■□□□□ 10.1
LIN28BQ6ZN17 HDDC2-207ENST00000608532 553 ntTSL 34.58□□□□□ -1.682e-7■□□□□ 10.1
Retrieved 100 of 21,972 protein–RNA pairs in 389.9 ms