RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	NISCH	Q9Y2I1	1504 aa		16.97	■□□□□ 0.31
SF3B3-209	ENST00000567635	CCDC180	Q9P1Z9	1646 aa		15.15	■□□□□ 0.02
SF3B3-209	ENST00000567635	ABCC9	O60706	1549 aa		14.98	□□□□□ -0.01
SF3B3-209	ENST00000567635	AEBP2	Q6ZN18	517 aa	Predicted RBP	14.46	□□□□□ -0.09
SF3B3-209	ENST00000567635	RB1CC1	Q8TDY2	1594 aa		14.35	□□□□□ -0.11
SF3B3-209	ENST00000567635	DCAF8L2	P0C7V8	631 aa		14.33	□□□□□ -0.12
SF3B3-209	ENST00000567635	NACAD	O15069	1562 aa		14.3	□□□□□ -0.12
SF3B3-209	ENST00000567635	MYO15B	Q96JP2	1530 aa		14.15	□□□□□ -0.14
SF3B3-209	ENST00000567635	CHIC1	Q5VXU3	224 aa		14.11	□□□□□ -0.15
SF3B3-209	ENST00000567635	UNC13A	Q9UPW8	1703 aa		14.07	□□□□□ -0.16
SF3B3-209	ENST00000567635	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.06	□□□□□ -0.16
SF3B3-209	ENST00000567635	DCAF1	Q9Y4B6	1507 aa		14.02	□□□□□ -0.16
SF3B3-209	ENST00000567635	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
SF3B3-209	ENST00000567635	DNAJC5B	Q9UF47	199 aa		13.94	□□□□□ -0.18
SF3B3-209	ENST00000567635	BICRA	Q9NZM4	1560 aa		13.91	□□□□□ -0.18
SF3B3-209	ENST00000567635	SCRIB	Q14160	1630 aa		13.81	□□□□□ -0.2
SF3B3-209	ENST00000567635	SHROOM4	Q9ULL8	1493 aa		13.73	□□□□□ -0.21
SF3B3-209	ENST00000567635	EIF4G1	Q04637	1599 aa	Known RBP	13.55	□□□□□ -0.24
SF3B3-209	ENST00000567635	CC2D2A	Q9P2K1	1620 aa		13.55	□□□□□ -0.24
SF3B3-209	ENST00000567635	CECR2	Q9BXF3	1484 aa		13.48	□□□□□ -0.25
SF3B3-209	ENST00000567635	NCAPD3	P42695	1498 aa		13.19	□□□□□ -0.3
SF3B3-209	ENST00000567635	SMARCA4	P51532	1647 aa		13.19	□□□□□ -0.3
SF3B3-209	ENST00000567635	ATAD2B	Q9ULI0	1458 aa		13.16	□□□□□ -0.3
SF3B3-209	ENST00000567635	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.15	□□□□□ -0.3
SF3B3-209	ENST00000567635	SMARCA2	P51531	1590 aa		13.15	□□□□□ -0.3
SF3B3-209	ENST00000567635	HMGXB3	Q12766	1538 aa		13.08	□□□□□ -0.31
SF3B3-209	ENST00000567635	MROH2B	Q7Z745	1585 aa		13.07	□□□□□ -0.32
SF3B3-209	ENST00000567635	PEG3	Q9GZU2	1588 aa		13.06	□□□□□ -0.32
SF3B3-209	ENST00000567635	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.04	□□□□□ -0.32
SF3B3-209	ENST00000567635	WIZ	O95785	1651 aa		12.94	□□□□□ -0.34
SF3B3-209	ENST00000567635	ERCC6	Q03468	1493 aa		12.93	□□□□□ -0.34
SF3B3-209	ENST00000567635	NES	P48681	1621 aa		12.92	□□□□□ -0.34
SF3B3-209	ENST00000567635	RSF1	Q96T23	1441 aa	Predicted RBP	12.88	□□□□□ -0.35
SF3B3-209	ENST00000567635	LAMC3	Q9Y6N6	1575 aa		12.86	□□□□□ -0.35
SF3B3-209	ENST00000567635	CUX2	O14529	1486 aa		12.85	□□□□□ -0.35
SF3B3-209	ENST00000567635	CADPS	Q9ULU8	1353 aa		12.81	□□□□□ -0.36
SF3B3-209	ENST00000567635	PDS5B	Q9NTI5	1447 aa		12.79	□□□□□ -0.36
SF3B3-209	ENST00000567635	KIF21A	Q7Z4S6	1674 aa		12.78	□□□□□ -0.36
SF3B3-209	ENST00000567635	TOP2A	P11388	1531 aa	Known RBP	12.76	□□□□□ -0.37
SF3B3-209	ENST00000567635	THOC2	Q8NI27	1593 aa	Known RBP	12.73	□□□□□ -0.37
SF3B3-209	ENST00000567635	DNAJC5	Q9H3Z4	198 aa		12.71	□□□□□ -0.37
SF3B3-209	ENST00000567635	CFTR	P13569	1480 aa		12.68	□□□□□ -0.38
SF3B3-209	ENST00000567635	MRC2	Q9UBG0	1479 aa		12.65	□□□□□ -0.38
SF3B3-209	ENST00000567635	CCDC88B	A6NC98	1476 aa		12.65	□□□□□ -0.38
SF3B3-209	ENST00000567635	FANCD2	Q9BXW9	1451 aa		12.65	□□□□□ -0.38
SF3B3-209	ENST00000567635	CEP164	Q9UPV0	1460 aa		12.64	□□□□□ -0.39
SF3B3-209	ENST00000567635	PRDM2	Q13029	1718 aa		12.61	□□□□□ -0.39
SF3B3-209	ENST00000567635	WDR62	O43379	1518 aa		12.6	□□□□□ -0.39
SF3B3-209	ENST00000567635	URB2	Q14146	1524 aa	Known RBP	12.52	□□□□□ -0.4
SF3B3-209	ENST00000567635	SUPT5H	O00267	1087 aa	Known RBP	12.48	□□□□□ -0.41
SF3B3-209	ENST00000567635	ABCC8	Q09428	1581 aa		12.44	□□□□□ -0.42
SF3B3-209	ENST00000567635	TOPBP1	Q92547	1522 aa		12.42	□□□□□ -0.42
SF3B3-209	ENST00000567635	SENP3	Q9H4L4	574 aa	Predicted RBP	12.41	□□□□□ -0.42
SF3B3-209	ENST00000567635	IFT140	Q96RY7	1462 aa		12.39	□□□□□ -0.43
SF3B3-209	ENST00000567635	DNMBP	Q6XZF7	1577 aa		12.39	□□□□□ -0.43
SF3B3-209	ENST00000567635	OSCAR	Q8IYS5	282 aa		12.36	□□□□□ -0.43
SF3B3-209	ENST00000567635	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.34	□□□□□ -0.43
SF3B3-209	ENST00000567635	PHF23	Q9BUL5	403 aa	Predicted RBP	12.34	□□□□□ -0.43
SF3B3-209	ENST00000567635	TARBP1	Q13395	1621 aa	Known RBP	12.3	□□□□□ -0.44
SF3B3-209	ENST00000567635	POLA1	P09884	1462 aa	Predicted RBP	12.3	□□□□□ -0.44
SF3B3-209	ENST00000567635	SOGA1	O94964	1423 aa		12.28	□□□□□ -0.44
SF3B3-209	ENST00000567635	AQR	O60306	1485 aa	Known RBP eCLIP	12.27	□□□□□ -0.44	4e-7	■■■■□ 20.5
SF3B3-209	ENST00000567635	RAD54L2	Q9Y4B4	1467 aa		12.27	□□□□□ -0.45
SF3B3-209	ENST00000567635	CUX1	P39880	1505 aa		12.27	□□□□□ -0.45
SF3B3-209	ENST00000567635	EIF4G3	O43432	1585 aa	Known RBP	12.26	□□□□□ -0.45
SF3B3-209	ENST00000567635	FGD5	Q6ZNL6	1462 aa		12.25	□□□□□ -0.45
SF3B3-209	ENST00000567635	TDRD9	Q8NDG6	1382 aa	Known RBP	12.24	□□□□□ -0.45
SF3B3-209	ENST00000567635	FBLN2	P98095	1184 aa		12.2	□□□□□ -0.46
SF3B3-209	ENST00000567635	TRIM41	Q8WV44	630 aa		12.2	□□□□□ -0.46
SF3B3-209	ENST00000567635	CHD1	O14646	1710 aa		12.2	□□□□□ -0.46
SF3B3-209	ENST00000567635	WDR97	A6NE52	1622 aa		12.19	□□□□□ -0.46
SF3B3-209	ENST00000567635	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.14	□□□□□ -0.47
SF3B3-209	ENST00000567635	GRIN2B	Q13224	1484 aa		12.14	□□□□□ -0.47
SF3B3-209	ENST00000567635	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.13	□□□□□ -0.47
SF3B3-209	ENST00000567635	TOP2B	Q02880	1626 aa		12.13	□□□□□ -0.47
SF3B3-209	ENST00000567635	GAPVD1	Q14C86	1478 aa		12.13	□□□□□ -0.47
SF3B3-209	ENST00000567635	ABCA10	Q8WWZ4	1543 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	RIMBP3C	A6NJZ7	1639 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	RIMBP3B	A6NNM3	1639 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	RIMBP3	Q9UFD9	1639 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	BIVM-ERCC5	R4GMW8	1640 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	SNAPC4	Q5SXM2	1469 aa		12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.12	□□□□□ -0.47
SF3B3-209	ENST00000567635	PBRM1	Q86U86	1689 aa		12.11	□□□□□ -0.47
SF3B3-209	ENST00000567635	SYNJ1	O43426	1573 aa		12.1	□□□□□ -0.47
SF3B3-209	ENST00000567635	ARHGEF11	O15085	1522 aa		12.08	□□□□□ -0.48
SF3B3-209	ENST00000567635	SYNJ2	O15056	1496 aa		12.08	□□□□□ -0.48
SF3B3-209	ENST00000567635	ABCA5	Q8WWZ7	1642 aa		12.08	□□□□□ -0.48
SF3B3-209	ENST00000567635	CYB5RL	Q6IPT4	315 aa		12.04	□□□□□ -0.48
SF3B3-209	ENST00000567635	CLASP1	Q7Z460	1538 aa		12.01	□□□□□ -0.49
SF3B3-209	ENST00000567635	ERICH3	Q5RHP9	1530 aa		11.98	□□□□□ -0.49
SF3B3-209	ENST00000567635	FHAD1	B1AJZ9	1412 aa		11.98	□□□□□ -0.49
SF3B3-209	ENST00000567635	ADAMTS12	P58397	1594 aa		11.96	□□□□□ -0.49
SF3B3-209	ENST00000567635	GRIN2A	Q12879	1464 aa		11.96	□□□□□ -0.49
SF3B3-209	ENST00000567635	ARAP1	Q96P48	1450 aa		11.96	□□□□□ -0.49
SF3B3-209	ENST00000567635	NUP160	Q12769	1436 aa		11.92	□□□□□ -0.5
SF3B3-209	ENST00000567635	CEP170	Q5SW79	1584 aa		11.92	□□□□□ -0.5
SF3B3-209	ENST00000567635	KIF27	Q86VH2	1401 aa		11.91	□□□□□ -0.5
SF3B3-209	ENST00000567635	IGF1R	P08069	1367 aa		11.9	□□□□□ -0.5
SF3B3-209	ENST00000567635	JPH4	Q96JJ6	628 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms