Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC27.06■■□□□ 1.92
PCDHA1Q9Y5I3 GUSBP5-201ENST00000418136 578 ntBASIC27.06■■□□□ 1.92
PCDHA1Q9Y5I3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.06■■□□□ 1.92
PCDHA1Q9Y5I3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
PCDHA1Q9Y5I3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.05■■□□□ 1.92
PCDHA1Q9Y5I3 SLC6A10P-202ENST00000431994 2058 ntBASIC27.05■■□□□ 1.92
PCDHA1Q9Y5I3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.05■■□□□ 1.92
PCDHA1Q9Y5I3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PCDHA1Q9Y5I3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC27.04■■□□□ 1.92
PCDHA1Q9Y5I3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PCDHA1Q9Y5I3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 KRT125P-201ENST00000546827 989 ntBASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 AC090877.2-201ENST00000558441 1738 ntBASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.03■■□□□ 1.92
PCDHA1Q9Y5I3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.02■■□□□ 1.92
PCDHA1Q9Y5I3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.02■■□□□ 1.92
PCDHA1Q9Y5I3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
PCDHA1Q9Y5I3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA1Q9Y5I3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.01■■□□□ 1.92
PCDHA1Q9Y5I3 MIR4787-201ENST00000607364 84 ntBASIC27.01■■□□□ 1.91
PCDHA1Q9Y5I3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
PCDHA1Q9Y5I3 AC021242.3-201ENST00000607598 1377 ntBASIC26.99■■□□□ 1.91
PCDHA1Q9Y5I3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
PCDHA1Q9Y5I3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA1Q9Y5I3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA1Q9Y5I3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA1Q9Y5I3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
PCDHA1Q9Y5I3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA1Q9Y5I3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.96■■□□□ 1.91
PCDHA1Q9Y5I3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHA1Q9Y5I3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.96■■□□□ 1.91
PCDHA1Q9Y5I3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHA1Q9Y5I3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
PCDHA1Q9Y5I3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.95■■□□□ 1.9
PCDHA1Q9Y5I3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA1Q9Y5I3 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA1Q9Y5I3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.94■■□□□ 1.9
PCDHA1Q9Y5I3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA1Q9Y5I3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA1Q9Y5I3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA1Q9Y5I3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 AF131216.4-201ENST00000638924 1588 ntBASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.92■■□□□ 1.9
PCDHA1Q9Y5I3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA1Q9Y5I3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA1Q9Y5I3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.91■■□□□ 1.9
PCDHA1Q9Y5I3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA1Q9Y5I3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA1Q9Y5I3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA1Q9Y5I3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
PCDHA1Q9Y5I3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.89■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms