Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX3-1Q99801 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
NKX3-1Q99801 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.35■□□□□ 0.85
NKX3-1Q99801 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.35■□□□□ 0.85
NKX3-1Q99801 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.35■□□□□ 0.85
NKX3-1Q99801 AC004812.2-201ENST00000611079 2094 ntBASIC20.35■□□□□ 0.85
NKX3-1Q99801 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NKX3-1Q99801 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX3-1Q99801 LINC00543-201ENST00000567234 1845 ntBASIC20.34■□□□□ 0.85
NKX3-1Q99801 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX3-1Q99801 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX3-1Q99801 ABCB10P4-201ENST00000566803 2184 ntBASIC20.34■□□□□ 0.85
NKX3-1Q99801 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NKX3-1Q99801 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NKX3-1Q99801 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX3-1Q99801 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX3-1Q99801 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX3-1Q99801 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
NKX3-1Q99801 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX3-1Q99801 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.33■□□□□ 0.85
NKX3-1Q99801 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX3-1Q99801 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX3-1Q99801 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX3-1Q99801 AC025884.2-201ENST00000553429 711 ntBASIC20.33■□□□□ 0.85
NKX3-1Q99801 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.33■□□□□ 0.84
NKX3-1Q99801 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX3-1Q99801 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX3-1Q99801 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX3-1Q99801 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX3-1Q99801 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX3-1Q99801 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX3-1Q99801 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX3-1Q99801 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 HSD17B1P1-201ENST00000590052 955 ntBASIC20.32■□□□□ 0.84
NKX3-1Q99801 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.32■□□□□ 0.84
NKX3-1Q99801 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX3-1Q99801 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.31■□□□□ 0.84
NKX3-1Q99801 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.31■□□□□ 0.84
NKX3-1Q99801 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX3-1Q99801 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.31■□□□□ 0.84
NKX3-1Q99801 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
NKX3-1Q99801 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX3-1Q99801 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NKX3-1Q99801 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
NKX3-1Q99801 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX3-1Q99801 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.3■□□□□ 0.84
NKX3-1Q99801 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
NKX3-1Q99801 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.3■□□□□ 0.84
NKX3-1Q99801 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX3-1Q99801 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NKX3-1Q99801 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX3-1Q99801 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NKX3-1Q99801 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NKX3-1Q99801 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
NKX3-1Q99801 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NKX3-1Q99801 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.29■□□□□ 0.84
NKX3-1Q99801 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX3-1Q99801 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
NKX3-1Q99801 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.29■□□□□ 0.84
NKX3-1Q99801 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX3-1Q99801 SMPD5-203ENST00000639008 1464 ntBASIC20.29■□□□□ 0.84
NKX3-1Q99801 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX3-1Q99801 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX3-1Q99801 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.28■□□□□ 0.84
NKX3-1Q99801 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX3-1Q99801 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.28■□□□□ 0.84
NKX3-1Q99801 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.28■□□□□ 0.84
NKX3-1Q99801 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NKX3-1Q99801 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.28■□□□□ 0.84
NKX3-1Q99801 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NKX3-1Q99801 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.28■□□□□ 0.84
NKX3-1Q99801 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX3-1Q99801 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX3-1Q99801 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX3-1Q99801 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX3-1Q99801 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.27■□□□□ 0.84
NKX3-1Q99801 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.26■□□□□ 0.83
NKX3-1Q99801 MIR3960-201ENST00000583311 91 ntBASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms