Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC10.72□□□□□ -0.69
USH2AO75445 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC10.72□□□□□ -0.69
USH2AO75445 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
USH2AO75445 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
USH2AO75445 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
USH2AO75445 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
USH2AO75445 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC10.72□□□□□ -0.69
USH2AO75445 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC10.72□□□□□ -0.69
USH2AO75445 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
USH2AO75445 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
USH2AO75445 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC10.71□□□□□ -0.69
USH2AO75445 GATM-206ENST00000558336 1522 ntTSL 2 BASIC10.71□□□□□ -0.69
USH2AO75445 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L2-201ENST00000561772 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L6-201ENST00000626483 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L1-201ENST00000627662 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L8-201ENST00000629013 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L3-201ENST00000630187 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L7-201ENST00000630678 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 DUX4L5-201ENST00000630834 1275 ntBASIC10.71□□□□□ -0.69
USH2AO75445 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
USH2AO75445 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
USH2AO75445 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
USH2AO75445 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC10.71□□□□□ -0.69
USH2AO75445 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
USH2AO75445 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
USH2AO75445 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
USH2AO75445 YBX1P1-201ENST00000445822 960 ntBASIC10.71□□□□□ -0.7
USH2AO75445 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC10.71□□□□□ -0.7
USH2AO75445 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC10.71□□□□□ -0.7
USH2AO75445 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
USH2AO75445 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC10.71□□□□□ -0.7
USH2AO75445 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC10.71□□□□□ -0.7
USH2AO75445 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC10.7□□□□□ -0.7
USH2AO75445 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC10.7□□□□□ -0.7
USH2AO75445 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC10.7□□□□□ -0.7
USH2AO75445 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC10.7□□□□□ -0.7
USH2AO75445 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
USH2AO75445 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
USH2AO75445 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC10.7□□□□□ -0.7
USH2AO75445 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
USH2AO75445 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
USH2AO75445 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
USH2AO75445 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC10.69□□□□□ -0.7
USH2AO75445 SYT6-210ENST00000641643 1587 ntBASIC10.69□□□□□ -0.7
USH2AO75445 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
USH2AO75445 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
USH2AO75445 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC10.69□□□□□ -0.7
USH2AO75445 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC10.69□□□□□ -0.7
USH2AO75445 GXYLT1P5-201ENST00000614548 1189 ntBASIC10.69□□□□□ -0.7
USH2AO75445 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC10.69□□□□□ -0.7
USH2AO75445 MIR4767-201ENST00000582827 78 ntBASIC10.69□□□□□ -0.7
USH2AO75445 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
USH2AO75445 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC10.68□□□□□ -0.7
USH2AO75445 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC10.68□□□□□ -0.7
USH2AO75445 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC10.68□□□□□ -0.7
USH2AO75445 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
USH2AO75445 TK2-208ENST00000545043 1120 ntTSL 2 BASIC10.68□□□□□ -0.7
USH2AO75445 SF1-220ENST00000626028 704 ntTSL 2 BASIC10.68□□□□□ -0.7
USH2AO75445 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
USH2AO75445 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
USH2AO75445 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC10.67□□□□□ -0.7
USH2AO75445 MAP2K4P1-201ENST00000438453 1195 ntBASIC10.67□□□□□ -0.7
USH2AO75445 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC10.67□□□□□ -0.7
USH2AO75445 AL139393.2-201ENST00000608721 2025 ntBASIC10.67□□□□□ -0.7
USH2AO75445 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC10.67□□□□□ -0.7
USH2AO75445 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC10.67□□□□□ -0.7
USH2AO75445 CDCA4P2-201ENST00000441182 718 ntBASIC10.67□□□□□ -0.7
USH2AO75445 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC10.67□□□□□ -0.7
USH2AO75445 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
USH2AO75445 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
USH2AO75445 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC10.66□□□□□ -0.7
USH2AO75445 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC10.66□□□□□ -0.7
USH2AO75445 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
USH2AO75445 TMEM191A-211ENST00000637163 1067 ntBASIC10.66□□□□□ -0.7
USH2AO75445 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms