Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA4P78363 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA4P78363 AL117332.1-201ENST00000622628 974 ntBASIC20.44■□□□□ 0.86
ABCA4P78363 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA4P78363 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA4P78363 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.43■□□□□ 0.86
ABCA4P78363 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.43■□□□□ 0.86
ABCA4P78363 AC026271.2-201ENST00000428091 497 ntBASIC20.43■□□□□ 0.86
ABCA4P78363 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.43■□□□□ 0.86
ABCA4P78363 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.43■□□□□ 0.86
ABCA4P78363 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA4P78363 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
ABCA4P78363 ZNRF2P3-201ENST00000424200 374 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.42■□□□□ 0.86
ABCA4P78363 AC010997.5-201ENST00000609182 354 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 MIR6724-1-201ENST00000616420 92 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 MIR6724-2-201ENST00000616483 92 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 MIR6724-4-201ENST00000617390 92 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 MIR6724-3-201ENST00000622482 92 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
ABCA4P78363 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA4P78363 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.42■□□□□ 0.86
ABCA4P78363 AC133561.4-201ENST00000566112 224 ntBASIC20.42■□□□□ 0.86
ABCA4P78363 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
ABCA4P78363 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA4P78363 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.42■□□□□ 0.86
ABCA4P78363 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.42■□□□□ 0.86
ABCA4P78363 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA4P78363 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 AL512631.2-201ENST00000604634 923 ntBASIC20.41■□□□□ 0.86
ABCA4P78363 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 AF131216.4-201ENST00000638924 1588 ntBASIC20.41■□□□□ 0.86
ABCA4P78363 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.41■□□□□ 0.86
ABCA4P78363 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA4P78363 SUDS3P1-201ENST00000505831 966 ntBASIC20.41■□□□□ 0.86
ABCA4P78363 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA4P78363 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA4P78363 AC092666.2-201ENST00000613287 246 ntBASIC20.4■□□□□ 0.86
ABCA4P78363 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA4P78363 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.39■□□□□ 0.85
ABCA4P78363 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA4P78363 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA4P78363 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.38■□□□□ 0.85
ABCA4P78363 AC096631.2-201ENST00000436136 790 ntBASIC20.38■□□□□ 0.85
ABCA4P78363 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.38■□□□□ 0.85
ABCA4P78363 MTDHP2-201ENST00000601468 714 ntBASIC20.38■□□□□ 0.85
ABCA4P78363 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
ABCA4P78363 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.38■□□□□ 0.85
ABCA4P78363 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.38■□□□□ 0.85
ABCA4P78363 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.38■□□□□ 0.85
ABCA4P78363 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.37■□□□□ 0.85
ABCA4P78363 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.37■□□□□ 0.85
ABCA4P78363 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
ABCA4P78363 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA4P78363 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.37■□□□□ 0.85
ABCA4P78363 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.37■□□□□ 0.85
ABCA4P78363 RARRES2P6-201ENST00000567333 442 ntBASIC20.37■□□□□ 0.85
ABCA4P78363 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.36■□□□□ 0.85
ABCA4P78363 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA4P78363 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA4P78363 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA4P78363 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.36■□□□□ 0.85
ABCA4P78363 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.36■□□□□ 0.85
ABCA4P78363 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA4P78363 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.36■□□□□ 0.85
ABCA4P78363 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.36■□□□□ 0.85
ABCA4P78363 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.35■□□□□ 0.85
ABCA4P78363 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
ABCA4P78363 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
ABCA4P78363 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA4P78363 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA4P78363 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.35■□□□□ 0.85
ABCA4P78363 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA4P78363 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA4P78363 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ABCA4P78363 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ABCA4P78363 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ABCA4P78363 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA4P78363 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA4P78363 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA4P78363 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA4P78363 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ABCA4P78363 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.33■□□□□ 0.85
ABCA4P78363 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ABCA4P78363 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ABCA4P78363 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCA4P78363 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms