Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.18■□□□□ 0.82
XRCC3O43542 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
XRCC3O43542 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC3O43542 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
XRCC3O43542 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
XRCC3O43542 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC3O43542 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC3O43542 ABCB10P4-201ENST00000566803 2184 ntBASIC20.15■□□□□ 0.82
XRCC3O43542 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.14■□□□□ 0.81
XRCC3O43542 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC3O43542 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC3O43542 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
XRCC3O43542 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 AL162393.1-201ENST00000437852 946 ntBASIC20.12■□□□□ 0.81
XRCC3O43542 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.12■□□□□ 0.81
XRCC3O43542 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
XRCC3O43542 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC3O43542 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
XRCC3O43542 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
XRCC3O43542 MIR6089-201ENST00000616698 64 ntBASIC20.11■□□□□ 0.81
XRCC3O43542 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC3O43542 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.1■□□□□ 0.81
XRCC3O43542 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.1■□□□□ 0.81
XRCC3O43542 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L13-201ENST00000554103 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L15-201ENST00000611059 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L23-201ENST00000615195 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L24-201ENST00000617576 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L22-201ENST00000618238 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L20-201ENST00000619712 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L21-201ENST00000622058 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L10-201ENST00000622460 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L25-201ENST00000624915 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
XRCC3O43542 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC3O43542 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.09■□□□□ 0.81
XRCC3O43542 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
XRCC3O43542 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.09■□□□□ 0.81
XRCC3O43542 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.09■□□□□ 0.81
XRCC3O43542 LINC01971-201ENST00000617888 1048 ntBASIC20.09■□□□□ 0.81
XRCC3O43542 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.08■□□□□ 0.81
XRCC3O43542 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 7.9 ms