Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.72■■□□□ 1.23
LSM1O15116 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.72■■□□□ 1.23
LSM1O15116 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.72■■□□□ 1.23
LSM1O15116 AC093536.1-201ENST00000569153 554 ntBASIC22.72■■□□□ 1.23
LSM1O15116 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.72■■□□□ 1.23
LSM1O15116 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LSM1O15116 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
LSM1O15116 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
LSM1O15116 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.71■■□□□ 1.23
LSM1O15116 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
LSM1O15116 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.7■■□□□ 1.22
LSM1O15116 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
LSM1O15116 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
LSM1O15116 LINC00543-201ENST00000567234 1845 ntBASIC22.7■■□□□ 1.22
LSM1O15116 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
LSM1O15116 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.69■■□□□ 1.22
LSM1O15116 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.69■■□□□ 1.22
LSM1O15116 AC007029.1-201ENST00000604183 313 ntBASIC22.69■■□□□ 1.22
LSM1O15116 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.69■■□□□ 1.22
LSM1O15116 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LSM1O15116 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LSM1O15116 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LSM1O15116 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.68■■□□□ 1.22
LSM1O15116 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.68■■□□□ 1.22
LSM1O15116 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.68■■□□□ 1.22
LSM1O15116 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LSM1O15116 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.68■■□□□ 1.22
LSM1O15116 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
LSM1O15116 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LSM1O15116 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
LSM1O15116 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LSM1O15116 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
LSM1O15116 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.67■■□□□ 1.22
LSM1O15116 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LSM1O15116 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
LSM1O15116 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.67■■□□□ 1.22
LSM1O15116 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.67■■□□□ 1.22
LSM1O15116 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.67■■□□□ 1.22
LSM1O15116 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.67■■□□□ 1.22
LSM1O15116 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
LSM1O15116 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.66■■□□□ 1.22
LSM1O15116 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.66■■□□□ 1.22
LSM1O15116 MIR6089-201ENST00000616698 64 ntBASIC22.66■■□□□ 1.22
LSM1O15116 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
LSM1O15116 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.65■■□□□ 1.22
LSM1O15116 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
LSM1O15116 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
LSM1O15116 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.64■■□□□ 1.22
LSM1O15116 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.64■■□□□ 1.22
LSM1O15116 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.22
LSM1O15116 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
LSM1O15116 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.64■■□□□ 1.22
LSM1O15116 RAP2CP1-202ENST00000605179 643 ntBASIC22.64■■□□□ 1.21
LSM1O15116 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
LSM1O15116 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.64■■□□□ 1.21
LSM1O15116 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
LSM1O15116 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
LSM1O15116 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
LSM1O15116 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LSM1O15116 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LSM1O15116 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LSM1O15116 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.63■■□□□ 1.21
LSM1O15116 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
LSM1O15116 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.63■■□□□ 1.21
LSM1O15116 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.63■■□□□ 1.21
LSM1O15116 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.63■■□□□ 1.21
LSM1O15116 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LSM1O15116 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
LSM1O15116 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
LSM1O15116 MIR4449-201ENST00000578365 66 ntBASIC22.62■■□□□ 1.21
LSM1O15116 AC141586.4-201ENST00000624558 1573 ntBASIC22.62■■□□□ 1.21
LSM1O15116 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
LSM1O15116 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
LSM1O15116 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
LSM1O15116 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
LSM1O15116 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LSM1O15116 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
LSM1O15116 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.6■■□□□ 1.21
LSM1O15116 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 641.1 ms