Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHB3Q9Y5E6 AC010980.1-201ENST00000587192 1142 ntBASIC23.16■■□□□ 1.3
PCDHB3Q9Y5E6 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHB3Q9Y5E6 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
PCDHB3Q9Y5E6 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
PCDHB3Q9Y5E6 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PCDHB3Q9Y5E6 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
PCDHB3Q9Y5E6 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHB3Q9Y5E6 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.3
PCDHB3Q9Y5E6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHB3Q9Y5E6 AL451085.2-201ENST00000605085 799 ntBASIC23.14■■□□□ 1.29
PCDHB3Q9Y5E6 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 ERN1-208ENST00000606895 2068 ntBASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
PCDHB3Q9Y5E6 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 KRT8P33-201ENST00000508125 1423 ntBASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDHB3Q9Y5E6 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHB3Q9Y5E6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHB3Q9Y5E6 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHB3Q9Y5E6 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PCDHB3Q9Y5E6 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 AC010501.1-201ENST00000606270 1962 ntBASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHB3Q9Y5E6 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
PCDHB3Q9Y5E6 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHB3Q9Y5E6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHB3Q9Y5E6 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHB3Q9Y5E6 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHB3Q9Y5E6 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.08■■□□□ 1.28
PCDHB3Q9Y5E6 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.08■■□□□ 1.28
PCDHB3Q9Y5E6 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHB3Q9Y5E6 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.06■■□□□ 1.28
PCDHB3Q9Y5E6 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
PCDHB3Q9Y5E6 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHB3Q9Y5E6 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHB3Q9Y5E6 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHB3Q9Y5E6 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHB3Q9Y5E6 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHB3Q9Y5E6 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHB3Q9Y5E6 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PCDHB3Q9Y5E6 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHB3Q9Y5E6 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHB3Q9Y5E6 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHB3Q9Y5E6 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 AC142381.3-201ENST00000568208 1670 ntBASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHB3Q9Y5E6 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.02■■□□□ 1.28
PCDHB3Q9Y5E6 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.02■■□□□ 1.28
PCDHB3Q9Y5E6 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHB3Q9Y5E6 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 AC087393.1-201ENST00000582896 145 ntBASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
PCDHB3Q9Y5E6 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 KRT18P10-201ENST00000388836 1287 ntBASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 AC009299.2-201ENST00000482477 511 ntBASIC23■■□□□ 1.27
PCDHB3Q9Y5E6 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms