Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
SHANK1Q9Y566 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
SHANK1Q9Y566 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.64■■□□□ 1.05
SHANK1Q9Y566 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK1Q9Y566 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK1Q9Y566 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.64■■□□□ 1.05
SHANK1Q9Y566 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.63■■□□□ 1.05
SHANK1Q9Y566 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK1Q9Y566 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK1Q9Y566 MIR6724-1-201ENST00000616420 92 ntBASIC21.63■■□□□ 1.05
SHANK1Q9Y566 MIR6724-2-201ENST00000616483 92 ntBASIC21.63■■□□□ 1.05
SHANK1Q9Y566 MIR6724-4-201ENST00000617390 92 ntBASIC21.63■■□□□ 1.05
SHANK1Q9Y566 MIR6724-3-201ENST00000622482 92 ntBASIC21.63■■□□□ 1.05
SHANK1Q9Y566 RARRES2P6-201ENST00000567333 442 ntBASIC21.63■■□□□ 1.05
SHANK1Q9Y566 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 AC096631.2-201ENST00000436136 790 ntBASIC21.62■■□□□ 1.05
SHANK1Q9Y566 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK1Q9Y566 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 AL449106.1-201ENST00000608517 1980 ntBASIC21.61■■□□□ 1.05
SHANK1Q9Y566 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 ZNRF2P3-201ENST00000424200 374 ntBASIC21.61■■□□□ 1.05
SHANK1Q9Y566 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
SHANK1Q9Y566 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK1Q9Y566 AC005837.3-201ENST00000612163 286 ntBASIC21.6■■□□□ 1.05
SHANK1Q9Y566 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK1Q9Y566 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK1Q9Y566 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.59■■□□□ 1.05
SHANK1Q9Y566 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK1Q9Y566 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK1Q9Y566 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHANK1Q9Y566 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
SHANK1Q9Y566 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 AC026271.2-201ENST00000428091 497 ntBASIC21.58■■□□□ 1.04
SHANK1Q9Y566 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.58■■□□□ 1.04
SHANK1Q9Y566 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 AC010997.5-201ENST00000609182 354 ntBASIC21.57■■□□□ 1.04
SHANK1Q9Y566 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 SUDS3P1-201ENST00000505831 966 ntBASIC21.57■■□□□ 1.04
SHANK1Q9Y566 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.57■■□□□ 1.04
SHANK1Q9Y566 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.56■■□□□ 1.04
SHANK1Q9Y566 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.56■■□□□ 1.04
SHANK1Q9Y566 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 AC133561.4-201ENST00000566112 224 ntBASIC21.55■■□□□ 1.04
SHANK1Q9Y566 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 MTDHP2-201ENST00000601468 714 ntBASIC21.55■■□□□ 1.04
SHANK1Q9Y566 AL356740.2-201ENST00000601559 647 ntBASIC21.55■■□□□ 1.04
SHANK1Q9Y566 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
SHANK1Q9Y566 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK1Q9Y566 AL121749.1-202ENST00000609313 2153 ntBASIC21.53■■□□□ 1.04
SHANK1Q9Y566 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.53■■□□□ 1.04
SHANK1Q9Y566 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
SHANK1Q9Y566 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK1Q9Y566 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.52■■□□□ 1.04
SHANK1Q9Y566 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SHANK1Q9Y566 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms