Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA1P49639 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA1P49639 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA1P49639 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA1P49639 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
HOXA1P49639 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA1P49639 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA1P49639 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA1P49639 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXA1P49639 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA1P49639 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA1P49639 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA1P49639 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA1P49639 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HOXA1P49639 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA1P49639 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA1P49639 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HOXA1P49639 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXA1P49639 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA1P49639 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXA1P49639 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXA1P49639 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA1P49639 AC008813.1-201ENST00000536597 885 ntBASIC19.41■□□□□ 0.7
HOXA1P49639 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXA1P49639 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA1P49639 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HOXA1P49639 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HOXA1P49639 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HOXA1P49639 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA1P49639 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
HOXA1P49639 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA1P49639 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA1P49639 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HOXA1P49639 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA1P49639 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA1P49639 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
HOXA1P49639 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXA1P49639 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXA1P49639 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA1P49639 C9orf163-202ENST00000624034 2573 ntBASIC19.39■□□□□ 0.69
HOXA1P49639 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA1P49639 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA1P49639 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HOXA1P49639 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L13-201ENST00000554103 1267 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 MIR219A2-201ENST00000608502 1504 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L15-201ENST00000611059 1267 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L23-201ENST00000615195 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L24-201ENST00000617576 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L22-201ENST00000618238 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L20-201ENST00000619712 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L21-201ENST00000622058 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L10-201ENST00000622460 1267 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 DUX4L25-201ENST00000624915 1269 ntBASIC19.38■□□□□ 0.69
HOXA1P49639 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA1P49639 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXA1P49639 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA1P49639 AC142381.3-201ENST00000568208 1670 ntBASIC19.37■□□□□ 0.69
HOXA1P49639 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA1P49639 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA1P49639 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HOXA1P49639 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXA1P49639 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA1P49639 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
HOXA1P49639 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA1P49639 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA1P49639 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA1P49639 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXA1P49639 AC148477.6-201ENST00000623746 465 ntBASIC19.34■□□□□ 0.69
HOXA1P49639 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA1P49639 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA1P49639 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXA1P49639 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.33■□□□□ 0.69
HOXA1P49639 ABCB10P4-201ENST00000566803 2184 ntBASIC19.33■□□□□ 0.69
HOXA1P49639 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.33■□□□□ 0.69
HOXA1P49639 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXA1P49639 AL359258.2-201ENST00000564063 1566 ntBASIC19.33■□□□□ 0.69
HOXA1P49639 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXA1P49639 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA1P49639 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA1P49639 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA1P49639 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms